{
    "type": "genome",
    "identifier": "GCF_000739085.1",
    "organism": "Amycolatopsis methanolica 239",
    "title": "Amycolatopsis methanolica 239",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese National Human Genome Center at Shanghai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000739085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02777954",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1068978",
        "species_taxid": "1814",
        "organism_name": "Amycolatopsis methanolica 239",
        "infraspecific_name": "strain=239",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/08/12",
        "asm_name": "ASM73908v1",
        "asm_submitter": "Chinese National Human Genome Center at Shanghai",
        "gbrs_paired_asm": "GCA_000739085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/739/085/GCF_000739085.1_ASM73908v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7237391",
        "genome_size_ungapped": "7237391",
        "gc_percent": "71.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000739085.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "7463",
        "protein_coding_gene_count": "7108",
        "non_coding_gene_count": "63",
        "pubmed_id": "29062941"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-08-12",
    "dateModified": "2014-08-12",
    "datePublished": "2014-08-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Amycolatopsis methanolica 239"
        ],
        "sample_taxid": [
            "1068978"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "1.927 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.76,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7237391",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "7237391",
        "N50 (bp)": "7237391",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.5",
        "Number of CDSs": "7448",
        "Average Protein Length": "292.3",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "9",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Amycolatopsis methanolica",
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                "accession": "GCA_000739085.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2403,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_000371885.1",
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                "species_taxid": 944492,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis viridis",
                "strain": "strain=DSM 45668",
                "accession": "GCA_011758765.1",
                "taxid": 185678,
                "species_taxid": 185678,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis granulosa",
                "strain": "strain=DSM 45669",
                "accession": "GCA_011758745.1",
                "taxid": 185684,
                "species_taxid": 185684,
                "relation_to_type": "type",
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                "ani": 87.8865,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis endophytica",
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                "accession": "GCA_013410405.1",
                "taxid": 860233,
                "species_taxid": 860233,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis acidiphila",
                "strain": "strain=KCTC 39523",
                "accession": "GCA_021391495.1",
                "taxid": 715473,
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                "ani": 82.4491,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis camponoti",
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                "accession": "GCA_902497555.1",
                "taxid": 2606593,
                "species_taxid": 2606593,
                "relation_to_type": "type",
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                "ani": 80.4524,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prauserella cavernicola",
                "strain": "strain=ASG 168",
                "accession": "GCA_016595675.1",
                "taxid": 2800127,
                "species_taxid": 2800127,
                "relation_to_type": "type",
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                "matched_fragments": 1078,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prauserella isguenensis",
                "strain": "strain=CECT 8577",
                "accession": "GCA_014191605.1",
                "taxid": 1470180,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_000739085.1",
                "gtdb_species": "s__Amycolatopsis methanolica",
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                "matched_fragments": 2405,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis",
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            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "methanolica",
        "239"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}