{
    "type": "genome",
    "identifier": "GCF_000739435.1",
    "organism": "Actinobacillus suis ATCC 33415",
    "title": "Actinobacillus suis ATCC 33415",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Missouri",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000739435.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN01918029",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "743972",
        "species_taxid": "716",
        "organism_name": "Actinobacillus suis ATCC 33415",
        "infraspecific_name": "strain=ATCC 33415",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/08/14",
        "asm_name": "ASM73943v1",
        "asm_submitter": "University of Missouri",
        "gbrs_paired_asm": "GCA_000739435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/739/435/GCF_000739435.1_ASM73943v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2501598",
        "genome_size_ungapped": "2501598",
        "gc_percent": "40.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000739435.1-RS_2024_04_07",
        "annotation_date": "2024-04-07",
        "total_gene_count": "2342",
        "protein_coding_gene_count": "2238",
        "non_coding_gene_count": "86",
        "pubmed_id": "25237027"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-08-14",
    "dateModified": "2014-08-14",
    "datePublished": "2014-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinobacillus suis ATCC 33415"
        ],
        "sample_taxid": [
            "743972"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.705 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2501598",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2501598",
        "N50 (bp)": "2501598",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.2",
        "Number of CDSs": "2269",
        "Average Protein Length": "325.1",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "19",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Actinobacillus suis",
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                "accession": "GCA_000739435.1",
                "taxid": 716,
                "species_taxid": 716,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 829,
                "total_fragments": 833,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinobacillus suis",
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                "accession": "GCA_900187155.1",
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                "species_taxid": 716,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 833,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinobacillus ureae",
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                "species_taxid": 723,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 833,
                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Actinobacillus equuli",
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                "species_taxid": 718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7817,
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                "total_fragments": 833,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinobacillus capsulatus",
                "strain": "strain=DSM 19761",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinobacillus pleuropneumoniae",
                "strain": "strain=4074",
                "accession": "GCA_000178495.2",
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                "species_taxid": 715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.6976,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Actinobacillus lignieresii",
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                "taxid": 720,
                "species_taxid": 720,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Actinobacillus pleuropneumoniae",
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                "accession": "GCA_003290385.1",
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                "species_taxid": 715,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Actinobacillus pleuropneumoniae",
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                "relation_to_type": "type",
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                "ani": 88.601,
                "matched_fragments": 557,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rodentibacter haemolyticus",
                "strain": "strain=DSM 111151",
                "accession": "GCA_015356115.1",
                "taxid": 2778911,
                "species_taxid": 2778911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9999,
                "matched_fragments": 160,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Otariodibacter oris",
                "strain": "strain=Baika1",
                "accession": "GCA_009684715.1",
                "taxid": 1032623,
                "species_taxid": 1032623,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Otariodibacter oris",
                "strain": "strain=DSM 23800",
                "accession": "GCA_003634665.1",
                "taxid": 1032623,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1283,
                "matched_fragments": 171,
                "total_fragments": 833,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000739435.1",
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                "matched_fragments": 831,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "ATCC",
        "33415"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}