{
    "type": "genome",
    "identifier": "GCF_000739575.1",
    "organism": "Halobellus rufus",
    "title": "Halobellus rufus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Basic Science Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000739575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00018744",
        "wgs_master": "BBJO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1448860",
        "species_taxid": "1448860",
        "organism_name": "Halobellus rufus",
        "infraspecific_name": "strain=CBA1103",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/07/31",
        "asm_name": "ASM73957v1",
        "asm_submitter": "Korea Basic Science Institute",
        "gbrs_paired_asm": "GCA_000739575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/739/575/GCF_000739575.1_ASM73957v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3852219",
        "genome_size_ungapped": "3852219",
        "gc_percent": "64.000000",
        "replicon_count": "0",
        "scaffold_count": "81",
        "contig_count": "81",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000739575.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "3945",
        "protein_coding_gene_count": "3669",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-07-31",
    "dateModified": "2014-07-31",
    "datePublished": "2014-07-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halobellus rufus"
        ],
        "sample_taxid": [
            "1448860"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "N/A"
        ],
        "sample_host_location_id": [],
        "data_size": "1.062 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3852219",
        "Number of Sequences": "81",
        "Longest Sequences (bp)": "414419",
        "N50 (bp)": "112619",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.1",
        "Number of CDSs": "3855",
        "Average Protein Length": "282.1",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Halobellus rufus",
                "strain": "strain=CBA1103",
                "accession": "GCA_000739575.1",
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                "species_taxid": 1448860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1240,
                "total_fragments": 1244,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halobellus limi",
                "strain": "strain=CGMCC 1.10331",
                "accession": "GCA_004799685.1",
                "taxid": 699433,
                "species_taxid": 699433,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9075,
                "matched_fragments": 774,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobellus captivus",
                "strain": "strain=ZY21",
                "accession": "GCA_007655485.1",
                "taxid": 2592614,
                "species_taxid": 2592614,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1244,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobellus limi",
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                "accession": "GCA_900108165.1",
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                "species_taxid": 699433,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8896,
                "matched_fragments": 777,
                "total_fragments": 1244,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobellus rarus",
                "strain": "strain=YC21",
                "accession": "GCA_024494595.1",
                "taxid": 1126237,
                "species_taxid": 1126237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4028,
                "matched_fragments": 739,
                "total_fragments": 1244,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobellus litoreus",
                "strain": "strain=GX31",
                "accession": "GCA_024464595.1",
                "taxid": 755310,
                "species_taxid": 755310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.203,
                "matched_fragments": 768,
                "total_fragments": 1244,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobellus clavatus",
                "strain": "strain=CGMCC 1.10118",
                "accession": "GCA_900107195.1",
                "taxid": 660517,
                "species_taxid": 660517,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0365,
                "matched_fragments": 707,
                "total_fragments": 1244,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halogeometricum rufum",
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                "accession": "GCA_900112175.1",
                "taxid": 553469,
                "species_taxid": 553469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9552,
                "matched_fragments": 537,
                "total_fragments": 1244,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000739575.1",
                "gtdb_species": "s__Halobellus rufus",
                "ani": 100.0,
                "matched_fragments": 1240,
                "total_fragments": 1244,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004799685.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007655485.1",
                "gtdb_species": "s__Halobellus captivus",
                "ani": 85.9082,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003665925.1",
                "gtdb_species": "s__Halobellus sp003665925",
                "ani": 83.7373,
                "matched_fragments": 696,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003665935.1",
                "gtdb_species": "s__Halobellus sp003665935",
                "ani": 83.5714,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107195.1",
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                "matched_fragments": 704,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 39.666,
        "optimum_ph": 7.416,
        "genome_size": 3852219.0,
        "gc_content": null,
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        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halobellus",
        "rufus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}