{ "type": "genome", "identifier": "GCF_000739735.1", "organism": "Paraburkholderia ginsengisoli NBRC 100965", "title": "Paraburkholderia ginsengisoli NBRC 100965", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000739735.1", "bioproject": "PRJNA224116", "biosample": "SAMD00017340", "wgs_master": "BBJF00000000.1", "refseq_category": "na", "taxid": "1218078", "species_taxid": "311231", "organism_name": "Paraburkholderia ginsengisoli NBRC 100965", "infraspecific_name": "strain=NBRC 100965", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/25", "asm_name": "ASM73973v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000739735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/739/735/GCF_000739735.1_ASM73973v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6541887", "genome_size_ungapped": "6541887", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000739735.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "5876", "protein_coding_gene_count": "5698", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-25", "dateModified": "2014-07-25", "datePublished": "2014-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia ginsengisoli NBRC 100965" ], "sample_taxid": [ "1218078" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Daejeon" ], "sample_host_location_id": [], "data_size": "1.807 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6541887", "Number of Sequences": "50", "Longest Sequences (bp)": "1196226", "N50 (bp)": "649517", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "5797", "Average Protein Length": "317.9", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia ginsengisoli", "strain": "strain=NBRC 100965", "accession": "GCA_000739735.1", "taxid": 311231, 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"validated": true, "ani": 87.4021, "matched_fragments": 1628, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia aromaticivorans", "strain": "strain=BN5", "accession": "GCA_002278075.1", "taxid": 2026199, "species_taxid": 2026199, "relation_to_type": "type", "validated": true, "ani": 87.0739, "matched_fragments": 1624, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia bryophila", "strain": "strain=LMG 23644", "accession": "GCA_003269035.1", "taxid": 420952, "species_taxid": 420952, "relation_to_type": "type", "validated": true, "ani": 86.9241, "matched_fragments": 1546, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia metrosideri", "strain": "strain=LMG 28140", "accession": "GCA_904848625.1", "taxid": 580937, "species_taxid": 580937, "relation_to_type": "type", "validated": true, "ani": 86.6093, "matched_fragments": 1576, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia sediminicola", "strain": "strain=LMG 24238", "accession": "GCA_902859805.1", "taxid": 458836, "species_taxid": 458836, "relation_to_type": "type", "validated": true, "ani": 86.5097, "matched_fragments": 1526, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia madseniana", "strain": "strain=RP11", "accession": "GCA_009690905.1", "taxid": 2599607, "species_taxid": 2599607, "relation_to_type": "type", "validated": true, "ani": 86.4638, "matched_fragments": 1496, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 86.4534, "matched_fragments": 1560, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 86.107, "matched_fragments": 1453, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 85.0905, "matched_fragments": 1157, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia concitans", "strain": "", "accession": "GCA_001544615.2", "taxid": 1777133, "species_taxid": 1777133, "relation_to_type": "type", "validated": true, "ani": 81.3229, "matched_fragments": 998, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" } ], 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