{ "type": "genome", "identifier": "GCF_000739775.1", "organism": "Paraburkholderia heleia NBRC 101817", "title": "Paraburkholderia heleia NBRC 101817", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000739775.1", "bioproject": "PRJNA224116", "biosample": "SAMD00017342", "wgs_master": "BBJH00000000.1", "refseq_category": "reference genome", "taxid": "1218080", "species_taxid": "634127", "organism_name": "Paraburkholderia heleia NBRC 101817", "infraspecific_name": "strain=NBRC 101817", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/25", "asm_name": "ASM73977v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000739775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/739/775/GCF_000739775.1_ASM73977v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8007470", "genome_size_ungapped": "8007470", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "110", "contig_count": "110", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000739775.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7403", "protein_coding_gene_count": "7152", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-25", "dateModified": "2014-07-25", "datePublished": "2014-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia heleia NBRC 101817" ], "sample_taxid": [ "1218080" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Viet Nam" ], "sample_host_location_id": [], "data_size": "2.216 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8007470", "Number of Sequences": "110", "Longest Sequences (bp)": "431683", "N50 (bp)": "161028", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.6", "Number of CDSs": "7236", "Average Protein Length": "315.2", "Coding Ratio (%)": "85.4", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia heleia", "strain": "strain=NBRC 101817", "accession": "GCA_000739775.1", "taxid": 634127, "species_taxid": 634127, 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1563, "total_fragments": 2615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=LMG 26416", "accession": "GCA_900109675.1", "taxid": 416943, "species_taxid": 416943, "relation_to_type": "type", "validated": true, "ani": 82.9167, "matched_fragments": 1341, "total_fragments": 2615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=TNe-841", "accession": "GCA_900104845.1", "taxid": 416943, "species_taxid": 416943, "relation_to_type": "type", "validated": true, "ani": 82.9073, "matched_fragments": 1356, "total_fragments": 2615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 81.1683, "matched_fragments": 1245, "total_fragments": 2615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia mallei", "strain": "strain=ATCC 23344", "accession": "GCA_000011705.1", "taxid": 13373, "species_taxid": 13373, "relation_to_type": "type", "validated": true, "ani": 81.0164, "matched_fragments": 963, "total_fragments": 2615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia gardini", "strain": "strain=LMG 32171", "accession": "GCA_907164575.1", "taxid": 2823469, "species_taxid": 2823469, "relation_to_type": "type", "validated": true, "ani": 81.0117, "matched_fragments": 1035, "total_fragments": 2615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 80.9927, "matched_fragments": 1127, "total_fragments": 2615, "ani_threshold": 95, "status": "below_threshold" }, { 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