{ "type": "genome", "identifier": "GCF_000739835.1", "organism": "Paraburkholderia terrae NBRC 100964", "title": "Paraburkholderia terrae NBRC 100964", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000739835.1", "bioproject": "PRJNA224116", "biosample": "SAMD00017344", "wgs_master": "BBJK00000000.1", "refseq_category": "na", "taxid": "1218084", "species_taxid": "311230", "organism_name": "Paraburkholderia terrae NBRC 100964", "infraspecific_name": "strain=NBRC 100964", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/25", "asm_name": "ASM73983v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000739835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/739/835/GCF_000739835.1_ASM73983v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9925782", "genome_size_ungapped": "9925782", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "247", "contig_count": "247", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000739835.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "9008", "protein_coding_gene_count": "8796", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-25", "dateModified": "2014-07-25", "datePublished": "2014-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia terrae NBRC 100964" ], "sample_taxid": [ "1218084" ], "sample_host_organism": [], 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95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002902925.1", "gtdb_species": "s__Paraburkholderia terrae", "ani": 99.9993, "matched_fragments": 3188, "total_fragments": 3190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.2599, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_002902965.1", "gtdb_species": "s__Paraburkholderia hospita", "ani": 95.2582, "matched_fragments": 2644, "total_fragments": 3190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.2599, "mean_intra_species_ani": 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"N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002902945.1", "gtdb_species": "s__Paraburkholderia caribensis", "ani": 92.8949, "matched_fragments": 2269, "total_fragments": 3190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "96.01", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.80", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_017104715.1", "gtdb_species": "s__Paraburkholderia sp017104715", "ani": 88.6428, "matched_fragments": 2256, "total_fragments": 3190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.204, "doubling_h": 0.0, "growth_tmp": 27.5, "optimum_tmp": 27.667, "optimum_ph": 7.0, "genome_size": 10302034.0, "gc_content": 61.969, "coding_genes": 8753.0, "rRNA16S_genes": 5.571, "tRNA_genes": 61.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paraburkholderia", "terrae", "NBRC", "100964" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }