{
    "type": "genome",
    "identifier": "GCF_000741135.1",
    "organism": "Bifidobacterium choerinum",
    "title": "Bifidobacterium choerinum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Parma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000741135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02673432",
        "wgs_master": "JGYU00000000.1",
        "refseq_category": "na",
        "taxid": "35760",
        "species_taxid": "35760",
        "organism_name": "Bifidobacterium choerinum",
        "infraspecific_name": "strain=LMG 10510",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/08/18",
        "asm_name": "Bifcho",
        "asm_submitter": "University of Parma",
        "gbrs_paired_asm": "GCA_000741135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/135/GCF_000741135.1_Bifcho",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2096123",
        "genome_size_ungapped": "2096123",
        "gc_percent": "65.500000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000741135.1-RS_2024_03_21",
        "annotation_date": "2024-03-21",
        "total_gene_count": "1765",
        "protein_coding_gene_count": "1659",
        "non_coding_gene_count": "67",
        "pubmed_id": "25085493;25107967"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-08-18",
    "dateModified": "2014-08-18",
    "datePublished": "2014-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium choerinum"
        ],
        "sample_taxid": [
            "35760"
        ],
        "sample_host_organism": [
            "pig"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.570 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2096123",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "501879",
        "N50 (bp)": "177964",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.5",
        "Number of CDSs": "1694",
        "Average Protein Length": "351.9",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bifidobacterium choerinum",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium choerinum",
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                "status": "conclusive"
            },
            {
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            },
            {
                "organism_name": "Bifidobacterium italicum",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium anseris",
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                "accession": "GCA_002860345.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium castoris",
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                "accession": "GCA_003952025.1",
                "taxid": 2306972,
                "species_taxid": 2306972,
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                "matched_fragments": 603,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum",
                "strain": "strain=ATCC 25526",
                "accession": "GCA_022691205.1",
                "taxid": 31954,
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                "relation_to_type": "type",
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                "ani": 83.0368,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
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                "accession": "GCA_018555435.2",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
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                "accession": "GCA_019331675.1",
                "taxid": 2834437,
                "species_taxid": 2834437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0916,
                "matched_fragments": 335,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
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                "accession": "GCA_021590045.1",
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                "relation_to_type": "type",
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                "ani": 76.6128,
                "matched_fragments": 188,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas fulva",
                "strain": "strain=DKR-3",
                "accession": "GCA_018531375.1",
                "taxid": 2835530,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_000741135.1",
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                "matched_fragments": 688,
                "total_fragments": 689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "choerinum"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}