{ "type": "genome", "identifier": "GCF_000741215.1", "organism": "Bifidobacterium pullorum subsp. gallinarum", "title": "Bifidobacterium pullorum subsp. gallinarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Parma", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000741215.1", "bioproject": "PRJNA224116", "biosample": "SAMN02673435", "wgs_master": "JGYX00000000.1", "refseq_category": "na", "taxid": "78344", "species_taxid": "78448", "organism_name": "Bifidobacterium pullorum subsp. gallinarum", "infraspecific_name": "strain=LMG 11586", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/18", "asm_name": "Bifgalrum", "asm_submitter": "University of Parma", "gbrs_paired_asm": "GCA_000741215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/215/GCF_000741215.1_Bifgalrum", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2160836", "genome_size_ungapped": "2160836", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000741215.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "1841", "protein_coding_gene_count": "1703", "non_coding_gene_count": "63", "pubmed_id": "25107967;25085493" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-18", "dateModified": "2014-08-18", "datePublished": "2014-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium pullorum subsp. gallinarum" ], "sample_taxid": [ "78344" ], "sample_host_organism": [ "chicken" ], "sample_host_organism_id": [], "sample_host_disease": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 81.9097, "matched_fragments": 392, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 79.9261, "matched_fragments": 273, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 76.4692, "matched_fragments": 99, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella glacieicola", "strain": "strain=T3246-1", "accession": "GCA_004353825.1", "taxid": 2518684, "species_taxid": 2518684, "relation_to_type": "type", "validated": true, "ani": 75.9784, "matched_fragments": 86, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000741215.1", "gtdb_species": "s__Bifidobacterium pullorum_B", "ani": 100.0, "matched_fragments": 715, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.16", "min_intra_species_ani": "95.67", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 17, "status": "conclusive" }, { "accession": "GCF_000771405.1", 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