{ "type": "genome", "identifier": "GCF_000741535.1", "organism": "Bifidobacterium boum", "title": "Bifidobacterium boum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Parma", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000741535.1", "bioproject": "PRJNA224116", "biosample": "SAMN02673428", "wgs_master": "JGYQ00000000.1", "refseq_category": "reference genome", "taxid": "78343", "species_taxid": "78343", "organism_name": "Bifidobacterium boum", "infraspecific_name": "strain=LMG 10736", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/18", "asm_name": "Bifbou", "asm_submitter": "University of Parma", "gbrs_paired_asm": "GCA_000741535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/535/GCF_000741535.1_Bifbou", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2171356", "genome_size_ungapped": "2171356", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000741535.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "1753", "protein_coding_gene_count": "1671", "non_coding_gene_count": "58", "pubmed_id": "25085493;25107967" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-18", "dateModified": "2014-08-18", "datePublished": "2014-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium boum" ], "sample_taxid": [ "78343" ], "sample_host_organism": [ "bovine" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.611 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2171356", "Number of Sequences": "18", "Longest Sequences (bp)": "643356", "N50 (bp)": "495453", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "1742", "Average Protein Length": "348.5", "Coding Ratio (%)": "83.9", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium boum", "strain": "strain=LMG 10736", "accession": "GCA_000741535.1", "taxid": 78343, "species_taxid": 78343, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 713, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium boum", "strain": "strain=DSM 20432", "accession": "GCA_000771385.1", "taxid": 78343, "species_taxid": 78343, "relation_to_type": "type", "validated": true, "ani": 99.9944, "matched_fragments": 705, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium boum", "strain": "strain=DSM 20432", "accession": "GCA_000687615.1", "taxid": 78343, "species_taxid": 78343, "relation_to_type": "type", "validated": true, "ani": 99.9918, "matched_fragments": 702, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium porcinum", "strain": "strain=DSM 17755", "accession": "GCA_000771045.1", "taxid": 212365, "species_taxid": 212365, "relation_to_type": "type", "validated": true, "ani": 86.5064, "matched_fragments": 520, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium apri", "strain": 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