{ "type": "genome", "identifier": "GCF_000741645.1", "organism": "Bifidobacterium minimum", "title": "Bifidobacterium minimum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Parma", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000741645.1", "bioproject": "PRJNA224116", "biosample": "SAMN02673441", "wgs_master": "JGZD00000000.1", "refseq_category": "na", "taxid": "1693", "species_taxid": "1693", "organism_name": "Bifidobacterium minimum", "infraspecific_name": "strain=LMG 11592", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/18", "asm_name": "Bifmin", "asm_submitter": "University of Parma", "gbrs_paired_asm": "GCA_000741645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/645/GCF_000741645.1_Bifmin", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1892860", "genome_size_ungapped": "1892860", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000741645.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "1601", "protein_coding_gene_count": "1443", "non_coding_gene_count": "54", "pubmed_id": "25085493;25107967" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-18", "dateModified": "2014-08-18", "datePublished": "2014-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium minimum" ], "sample_taxid": [ "1693" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.527 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1892860", "Number of Sequences": "18", "Longest Sequences (bp)": "753534", "N50 (bp)": "236969", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "1575", "Average Protein Length": "342.3", "Coding Ratio (%)": "85.4", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium minimum", "strain": "strain=LMG 11592", "accession": "GCA_000741645.1", "taxid": 1693, "species_taxid": 1693, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 622, "total_fragments": 622, "ani_threshold": 95, "status": 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