{
    "type": "genome",
    "identifier": "GCF_000741715.1",
    "organism": "Bifidobacterium saguini DSM 23967",
    "title": "Bifidobacterium saguini DSM 23967",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Parma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000741715.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02673451",
        "wgs_master": "JGZN00000000.1",
        "refseq_category": "na",
        "taxid": "1437607",
        "species_taxid": "762210",
        "organism_name": "Bifidobacterium saguini DSM 23967",
        "infraspecific_name": "strain=DSM 23967",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/08/18",
        "asm_name": "Bifsag",
        "asm_submitter": "University of Parma",
        "gbrs_paired_asm": "GCA_000741715.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/715/GCF_000741715.1_Bifsag",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2787036",
        "genome_size_ungapped": "2787036",
        "gc_percent": "56.500000",
        "replicon_count": "0",
        "scaffold_count": "33",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000741715.1-RS_2024_03_21",
        "annotation_date": "2024-03-21",
        "total_gene_count": "2390",
        "protein_coding_gene_count": "2236",
        "non_coding_gene_count": "79",
        "pubmed_id": "25085493;25107967"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-08-18",
    "dateModified": "2014-08-18",
    "datePublished": "2014-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium saguini DSM 23967"
        ],
        "sample_taxid": [
            "1437607"
        ],
        "sample_host_organism": [
            "tamarin"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.791 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.48,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2787036",
        "Number of Sequences": "33",
        "Longest Sequences (bp)": "362423",
        "N50 (bp)": "285652",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.4",
        "Number of CDSs": "2336",
        "Average Protein Length": "345.2",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Bifidobacterium saguini",
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                "accession": "GCA_000741715.1",
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                "species_taxid": 762210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9999,
                "matched_fragments": 910,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium saguini",
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                "accession": "GCA_000771625.1",
                "taxid": 762210,
                "species_taxid": 762210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9762,
                "matched_fragments": 897,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium saguini",
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                "accession": "GCA_017378515.1",
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                "species_taxid": 762210,
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                "ani": 99.958,
                "matched_fragments": 883,
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                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium imperatoris",
                "strain": "strain=Tam1G",
                "accession": "GCA_002860405.1",
                "taxid": 2020965,
                "species_taxid": 2020965,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.9567,
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                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium felsineum",
                "strain": "strain=TRE H",
                "accession": "GCA_002802915.1",
                "taxid": 2045440,
                "species_taxid": 2045440,
                "relation_to_type": "type",
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                "ani": 86.7583,
                "matched_fragments": 611,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium colobi",
                "strain": "strain=LC6",
                "accession": "GCA_018555455.1",
                "taxid": 2809026,
                "species_taxid": 2809026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2819,
                "matched_fragments": 621,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium cebidarum",
                "strain": "strain=LMG 31469",
                "accession": "GCA_009193305.1",
                "taxid": 2650773,
                "species_taxid": 2650773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0213,
                "matched_fragments": 589,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
                "strain": "strain=82T25",
                "accession": "GCA_019331675.1",
                "taxid": 2834437,
                "species_taxid": 2834437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9113,
                "matched_fragments": 503,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium myosotis",
                "strain": "strain=DSM 100196",
                "accession": "GCA_002259745.1",
                "taxid": 1630166,
                "species_taxid": 1630166,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3393,
                "matched_fragments": 460,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
                "strain": "strain=MA1",
                "accession": "GCA_018555435.2",
                "taxid": 2809027,
                "species_taxid": 2809027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5809,
                "matched_fragments": 331,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.48,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000741715.1",
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                "matched_fragments": 910,
                "total_fragments": 913,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
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            },
            {
                "accession": "GCF_002860405.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            {
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "saguini",
        "DSM",
        "23967"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}