{
    "type": "genome",
    "identifier": "GCF_000741785.1",
    "organism": "Bifidobacterium stellenboschense",
    "title": "Bifidobacterium stellenboschense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Parma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000741785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02673453",
        "wgs_master": "JGZP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "762211",
        "species_taxid": "762211",
        "organism_name": "Bifidobacterium stellenboschense",
        "infraspecific_name": "strain=DSM 23968",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/08/18",
        "asm_name": "Bifste",
        "asm_submitter": "University of Parma",
        "gbrs_paired_asm": "GCA_000741785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/785/GCF_000741785.1_Bifste",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2812864",
        "genome_size_ungapped": "2812864",
        "gc_percent": "65.500000",
        "replicon_count": "0",
        "scaffold_count": "40",
        "contig_count": "40",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000741785.1-RS_2024_03_27",
        "annotation_date": "2024-03-27",
        "total_gene_count": "2301",
        "protein_coding_gene_count": "2164",
        "non_coding_gene_count": "84",
        "pubmed_id": "25107967;25085493"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-08-18",
    "dateModified": "2014-08-18",
    "datePublished": "2014-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium stellenboschense"
        ],
        "sample_taxid": [
            "762211"
        ],
        "sample_host_organism": [
            "tamarin"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.772 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2812864",
        "Number of Sequences": "40",
        "Longest Sequences (bp)": "347637",
        "N50 (bp)": "134974",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.3",
        "Number of CDSs": "2224",
        "Average Protein Length": "359.2",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Bifidobacterium parmae",
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                "taxid": 361854,
                "species_taxid": 361854,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium aesculapii",
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                "ani_threshold": 95,
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            },
            {
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                "matched_fragments": 591,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium santillanense",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
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                "accession": "GCA_018555435.2",
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                "species_taxid": 2809027,
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                "matched_fragments": 510,
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            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
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            },
            {
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                "relation_to_type": "type",
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            },
            {
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 471,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum",
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                "accession": "GCA_022691205.1",
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                "species_taxid": 1694,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium mizhiense",
                "strain": "strain=S053-2",
                "accession": "GCA_020884755.1",
                "taxid": 2879940,
                "species_taxid": 2879940,
                "relation_to_type": "type",
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                "ani": 78.1496,
                "matched_fragments": 151,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micrococcus flavus",
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                "accession": "GCA_022348285.1",
                "taxid": 384602,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_000741785.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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        ]
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    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.602,
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}