{
    "type": "genome",
    "identifier": "GCF_000741965.1",
    "organism": "Neisseria lactamica ATCC 23970",
    "title": "Neisseria lactamica ATCC 23970",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Los Alamos National Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000741965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02870721",
        "wgs_master": "JOVI00000000.1",
        "refseq_category": "na",
        "taxid": "546265",
        "species_taxid": "486",
        "organism_name": "Neisseria lactamica ATCC 23970",
        "infraspecific_name": "strain=ATCC 23970",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/08/19",
        "asm_name": "ASM74196v1",
        "asm_submitter": "Los Alamos National Laboratory",
        "gbrs_paired_asm": "GCA_000741965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/965/GCF_000741965.1_ASM74196v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2182033",
        "genome_size_ungapped": "2181733",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000741965.1-RS_2024_05_16",
        "annotation_date": "2024-05-16",
        "total_gene_count": "2142",
        "protein_coding_gene_count": "1963",
        "non_coding_gene_count": "73",
        "pubmed_id": "25291770"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-08-19",
    "dateModified": "2014-08-19",
    "datePublished": "2014-08-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Neisseria lactamica ATCC 23970"
        ],
        "sample_taxid": [
            "546265"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "0.605 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2182033",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2182033",
        "N50 (bp)": "2182033",
        "Gap Ratio (%)": "0.013749",
        "GCcontent (%)": "52.2",
        "Number of CDSs": "1998",
        "Average Protein Length": "306.8",
        "Coding Ratio (%)": "84.3",
        "Number of rRNAs": "12",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Neisseria lactamica",
                "strain": "strain=ATCC 23970",
                "accession": "GCA_000741965.1",
                "taxid": 486,
                "species_taxid": 486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 725,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Neisseria lactamica",
                "strain": "strain=NCTC10617",
                "accession": "GCA_901482445.1",
                "taxid": 486,
                "species_taxid": 486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9886,
                "matched_fragments": 723,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Neisseria lactamica",
                "strain": "strain=ATCC 23970",
                "accession": "GCA_000173995.1",
                "taxid": 486,
                "species_taxid": 486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9196,
                "matched_fragments": 674,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Neisseria meningitidis",
                "strain": "strain=NCTC10025",
                "accession": "GCA_900638555.1",
                "taxid": 487,
                "species_taxid": 487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7575,
                "matched_fragments": 588,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria meningitidis",
                "strain": "strain=PartJ-Nmeningitidis-RM8376",
                "accession": "GCA_022869645.1",
                "taxid": 487,
                "species_taxid": 487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7429,
                "matched_fragments": 589,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria gonorrhoeae",
                "strain": "strain=DSM 9188",
                "accession": "GCA_003315235.1",
                "taxid": 485,
                "species_taxid": 485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.3454,
                "matched_fragments": 574,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria cinerea",
                "strain": "strain=CCUG 2156",
                "accession": "GCA_021025975.1",
                "taxid": 483,
                "species_taxid": 483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.3167,
                "matched_fragments": 534,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Morococcus cerebrosus",
                "strain": "strain=CIP 81.93",
                "accession": "GCA_000813705.1",
                "taxid": 1056807,
                "species_taxid": 1056807,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9526,
                "matched_fragments": 418,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Morococcus cerebrosus",
                "strain": "strain=CIP 81.93",
                "accession": "GCA_022749515.1",
                "taxid": 1056807,
                "species_taxid": 1056807,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8461,
                "matched_fragments": 461,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria perflava",
                "strain": "strain=CCUG 17915",
                "accession": "GCA_023472875.1",
                "taxid": 33053,
                "species_taxid": 33053,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.9428,
                "matched_fragments": 392,
                "total_fragments": 727,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_901482445.1",
                "gtdb_species": "s__Neisseria lactamica",
                "ani": 99.9888,
                "matched_fragments": 722,
                "total_fragments": 727,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.73",
                "min_intra_species_ani": "97.33",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 36,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000193795.1",
                "gtdb_species": "s__Neisseria lactamica_A",
                "ani": 94.3244,
                "matched_fragments": 582,
                "total_fragments": 727,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000176735.1",
                "gtdb_species": "s__Neisseria polysaccharea",
                "ani": 94.1452,
                "matched_fragments": 555,
                "total_fragments": 727,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.23",
                "min_intra_species_ani": "95.40",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_003044455.1",
                "gtdb_species": "s__Neisseria bergeri",
                "ani": 93.8599,
                "matched_fragments": 611,
                "total_fragments": 727,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.18",
                "min_intra_species_ani": "96.14",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900638555.1",
                "gtdb_species": "s__Neisseria meningitidis",
                "ani": 93.7317,
                "matched_fragments": 587,
                "total_fragments": 727,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0389,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2138,
                "status": "-"
            },
            {
                "accession": "GCF_003315235.1",
                "gtdb_species": "s__Neisseria gonorrhoeae",
                "ani": 93.346,
                "matched_fragments": 574,
                "total_fragments": 727,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0389,
                "mean_intra_species_ani": "99.56",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 796,
                "status": "-"
            },
            {
                "accession": "GCF_900475315.1",
                "gtdb_species": "s__Neisseria cinerea",
                "ani": 90.1917,
                "matched_fragments": 545,
                "total_fragments": 727,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
                "min_intra_species_ani": "96.82",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.086,
        "cell_length": -0.056,
        "doubling_h": -0.218,
        "growth_tmp": 35.0,
        "optimum_tmp": 36.0,
        "optimum_ph": 7.0,
        "genome_size": 2246907.0,
        "gc_content": 52.336,
        "coding_genes": 2055.8,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 58.75,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Neisseria",
        "lactamica",
        "ATCC",
        "23970"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}