{ "type": "genome", "identifier": "GCF_000744105.1", "organism": "Maribacter forsetii DSM 18668", "title": "Maribacter forsetii DSM 18668", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000744105.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745580", "wgs_master": "JQLH00000000.1", "refseq_category": "reference genome", "taxid": "1392498", "species_taxid": "444515", "organism_name": "Maribacter forsetii DSM 18668", "infraspecific_name": "strain=DSM 18668", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/28", "asm_name": "ASM74410v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000744105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/744/105/GCF_000744105.1_ASM74410v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4514366", "genome_size_ungapped": "4514366", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000744105.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3894", "protein_coding_gene_count": "3825", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-28", "dateModified": "2014-08-28", "datePublished": "2014-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Maribacter forsetii DSM 18668" ], "sample_taxid": [ "1392498" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.261 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4514366", "Number of Sequences": "1", "Longest Sequences (bp)": "4514366", "N50 (bp)": "4514366", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.2", "Number of CDSs": "3817", "Average Protein Length": "354.8", "Coding Ratio (%)": "90.0", "Number of rRNAs": "9", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maribacter forsetii", "strain": "strain=DSM 18668", "accession": "GCA_000744105.1", "taxid": 444515, "species_taxid": 444515, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1504, "total_fragments": 1504, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Maribacter caenipelagi", "strain": "strain=CECT 8455", "accession": "GCA_004364175.1", "taxid": 1447781, "species_taxid": 1447781, "relation_to_type": "type", "validated": true, "ani": 85.4457, "matched_fragments": 1049, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter aquivivus", "strain": "strain=DSM 16478", "accession": "GCA_900142175.1", "taxid": 228958, "species_taxid": 228958, "relation_to_type": "type", "validated": true, "ani": 85.0555, "matched_fragments": 1131, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter spongiicola", "strain": "strain=DSM 25233", "accession": "GCA_004364165.1", "taxid": 1206753, "species_taxid": 1206753, "relation_to_type": "type", "validated": true, "ani": 84.6334, "matched_fragments": 1053, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter ulvicola", "strain": "strain=DSM 15366", "accession": "GCA_900155985.1", "taxid": 228959, "species_taxid": 228959, "relation_to_type": "type", "validated": true, "ani": 84.4469, "matched_fragments": 1033, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter litoralis", "strain": "strain=SDRB-Phe2", "accession": "GCA_003075045.1", "taxid": 2059726, "species_taxid": 2059726, "relation_to_type": "type", "validated": true, "ani": 83.9297, "matched_fragments": 1045, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter stanieri", "strain": "strain=DSM 19891", "accession": "GCA_900112245.1", "taxid": 440514, "species_taxid": 440514, "relation_to_type": "type", "validated": true, "ani": 82.4657, "matched_fragments": 1059, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 76.8466, "matched_fragments": 56, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda onchidii", "strain": "strain=XY-359", "accession": "GCA_004804315.1", "taxid": 2562684, "species_taxid": 2562684, "relation_to_type": "type", "validated": true, "ani": 76.2625, "matched_fragments": 100, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000744105.1", "gtdb_species": "s__Maribacter forsetii", "ani": 100.0, "matched_fragments": 1503, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004364175.1", "gtdb_species": "s__Maribacter caenipelagi", "ani": 85.4409, "matched_fragments": 1050, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142175.1", "gtdb_species": "s__Maribacter aquivivus", "ani": 85.0624, "matched_fragments": 1130, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004364165.1", "gtdb_species": "s__Maribacter spongiicola", "ani": 84.6184, "matched_fragments": 1055, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900155985.1", "gtdb_species": "s__Maribacter ulvicola", "ani": 84.4396, "matched_fragments": 1034, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003075045.1", "gtdb_species": "s__Maribacter litoralis", "ani": 83.9026, "matched_fragments": 1048, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.43", "min_intra_species_ani": "97.43", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900112245.1", "gtdb_species": "s__Maribacter stanieri", "ani": 82.468, "matched_fragments": 1059, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011050675.1", "gtdb_species": "s__Maribacter sp011050675", "ani": 82.2768, "matched_fragments": 1003, "total_fragments": 1504, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.544, "doubling_h": null, "growth_tmp": 24.0, "optimum_tmp": 25.0, "optimum_ph": 7.5, "genome_size": 4514366.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Maribacter", "forsetii", "DSM", "18668" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }