{ "type": "genome", "identifier": "GCF_000744705.1", "organism": "Streptacidiphilus albus JL83", "title": "Streptacidiphilus albus JL83", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000744705.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745413", "wgs_master": "JQML00000000.1", "refseq_category": "reference genome", "taxid": "1449352", "species_taxid": "105425", "organism_name": "Streptacidiphilus albus JL83", "infraspecific_name": "strain=JL83", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/28", "asm_name": "ASM74470v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000744705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/744/705/GCF_000744705.1_ASM74470v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9915093", "genome_size_ungapped": "9915093", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000744705.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "8836", "protein_coding_gene_count": "8505", "non_coding_gene_count": "114", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-28", "dateModified": "2014-08-28", "datePublished": "2014-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptacidiphilus albus JL83" ], "sample_taxid": [ "1449352" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: County Durham, Hamsterly Forest" ], "sample_host_location_id": [], "data_size": "2.637 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9915093", "Number of Sequences": "1", "Longest Sequences (bp)": "9915093", "N50 (bp)": "9915093", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.8", "Number of CDSs": "8984", "Average Protein Length": "322.4", "Coding Ratio (%)": "87.7", "Number of rRNAs": "27", "Number of tRNAs": "114", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptacidiphilus albus", "strain": "strain=JL83", "accession": "GCA_000744705.1", "taxid": 105425, "species_taxid": 105425, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus fuscans", "strain": "strain=NEAU-YB345", "accession": "GCA_015690355.1", "taxid": 2789292, "species_taxid": 2789292, "relation_to_type": "type", "validated": true, "ani": 81.3792, "matched_fragments": 1444, "total_fragments": 3305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus pinicola", "strain": "strain=MMS16-CNU450", "accession": "GCA_003258295.1", "taxid": 2219663, "species_taxid": 2219663, "relation_to_type": "type", "validated": true, "ani": 81.095, "matched_fragments": 1342, "total_fragments": 3305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=CGMCC 4.1857", "accession": "GCA_900109465.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 80.9155, "matched_fragments": 1485, "total_fragments": 3305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=NBRC 100920", "accession": "GCA_000787795.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 80.8601, "matched_fragments": 1512, "total_fragments": 3305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus melanogenes", "strain": "strain=NBRC 103184", "accession": "GCA_000787835.1", "taxid": 411235, "species_taxid": 411235, "relation_to_type": "type", "validated": true, "ani": 80.7869, "matched_fragments": 1452, "total_fragments": 3305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peterkaempfera bronchialis", "strain": "strain=DSM 106435", "accession": "GCA_003258605.2", "taxid": 2126346, "species_taxid": 2126346, "relation_to_type": "type", "validated": true, "ani": 80.3969, "matched_fragments": 1196, "total_fragments": 3305, "ani_threshold": 95, "status": 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