# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence1:1..834(+)	frameshift		795	WP_011461874.1	heavy metal translocating P-type ATPase	97.1	33.0	75.6
MGA_2	LOCUS_00020	sequence1:807..1415(+)	frameshift		801	WP_010714164.1	heavy metal translocating P-type ATPase	99.5	24.3	84.6
MGA_15	LOCUS_00150	sequence1:16134..16529(+)	frameshift		15954,16500,16692	WP_165992825.1	IS3 family transposase	92.4	31.8	66.9
MGA_16	LOCUS_00160	sequence1:16906..17745(-)	frameshift		17960,17801	WP_100190746.1	IS3 family transposase	100.0	73.0	98.9
MGA_19	LOCUS_00190	sequence1:19254..19658(-)	partial			WP_011222049.1	Tn3 family transposase	74.6	10.0	53.0
MGA_21	LOCUS_00210	sequence1:20538..21452(+)	partial			WP_009933212.1	hypothetical protein	85.5	70.9	26.7
MGA_28	LOCUS_00280	sequence1:26100..27041(+)	partial			WP_211478054.1	ABC transporter permease subunit	82.1	72.9	31.1
MGA_39	LOCUS_00390	sequence1:33886..34836(+)	partial			WP_010774283.1	replication initiator protein A	48.4	44.6	37.0
MGA_49	LOCUS_00490	sequence1:43752..45167(+)	partial			WP_013389490.1	endo-alpha-N-acetylgalactosaminidase family protein	42.9	10.8	25.5
MGA_70	LOCUS_00700	sequence1:67744..68064(-)	frameshift		68171	WP_050340461.1	site-specific integrase	100.0	54.4	76.4
MGA_83	LOCUS_00830	sequence1:79873..81093(+)	partial			WP_002287901.1	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	95.3	52.3	38.8
MGA_127	LOCUS_01270	sequence1:129318..129470(+)	partial			WP_000160701.1	AAA family ATPase	90.0	16.6	55.6
MGA_132	LOCUS_01320	sequence1:134318..135793(-)	partial			WP_140224321.1	M protein trans-acting positive regulator PRD domain-containing protein	68.2	65.6	22.6
MGA_134	LOCUS_01340	sequence1:137127..137288(-)	frameshift		137293	WP_000285679.1	acetamidase/formamidase family protein	86.8	15.2	58.7
MGA_135	LOCUS_01350	sequence1:137228..138022(-)	frameshift		137293	WP_000285667.1	acetamidase/formamidase family protein	95.1	82.6	51.0
MGA_152	LOCUS_01520	sequence1:153339..153632(+)	partial			WP_002295087.1	cell division protein ZapA	99.0	66.2	37.5
MGA_165	LOCUS_01650	sequence1:168037..169098(-)	partial			WP_003733801.1	YslB family protein	38.2	82.9	44.1
MGA_201	LOCUS_02010	sequence1:208315..208650(+)	partial			WP_011921720.1	competence type IV pilus major pilin ComGC	69.4	80.6	41.6
MGA_253	LOCUS_02530	sequence1:263992..264519(+)	partial			WP_000993581.1	DUF1129 family protein	66.9	51.1	33.3
MGA_260	LOCUS_02600	sequence1:272880..273491(+)	partial			WP_003244088.1	TetR/AcrR family transcriptional regulator	59.6	60.8	33.9
MGA_334	LOCUS_03340	sequence1:346841..348433(+)	partial			WP_000224695.1	hypothetical protein	53.2	43.9	26.0
MGA_359	LOCUS_03590	sequence1:370896..371120(+)	partial			WP_010989929.1	PLDc N-terminal domain-containing protein	73.0	83.1	48.1
MGA_384	LOCUS_03840	sequence1:394439..394798(-)	partial			WP_002367468.1	hypothetical protein	74.8	24.9	50.0
MGA_389	LOCUS_03890	sequence1:397599..397976(+)	frameshift		397868	WP_002295818.1	transketolase	72.0	13.7	79.1
MGA_390	LOCUS_03900	sequence1:397985..399589(+)	frameshift		397868	WP_002295818.1	transketolase	100.0	80.3	71.5
MGA_391	LOCUS_03910	sequence1:399807..400043(+)	partial			WP_001548645.1	YneF family protein	82.1	67.4	65.6
MGA_439	LOCUS_04390	sequence1:458564..458944(-)	partial			WP_002288357.1	site-specific integrase	93.7	31.5	56.8
MGA_441	LOCUS_04410	sequence1:459962..460771(-)	partial			WP_002288357.1	site-specific integrase	91.1	65.1	46.1
MGA_442	LOCUS_04420	sequence1:460917..461567(-)	partial			WP_011860905.1	glycosylating toxin anti-sigma factor TcdC	56.0	52.2	48.8
MGA_445	LOCUS_04450	sequence1:462622..462885(+)	partial			WP_004399463.1	hypothetical protein	96.6	58.4	38.8
MGA_465	LOCUS_04650	sequence1:480752..483304(+)	partial			WP_157860128.1	lectin like domain-containing protein	54.1	69.4	26.5
MGA_484	LOCUS_04840	sequence1:505172..506005(+)	partial			WP_004469034.1	TPM domain-containing protein	60.6	61.9	40.1
MGA_505	LOCUS_05050	sequence1:524177..525160(+)	partial			WP_000078846.1	sortase SrtA	56.6	74.9	36.2
MGA_525	LOCUS_05250	sequence1:551256..551810(+)	partial			WP_000779367.1	MepB family protein	66.3	70.8	56.6
MGA_534	LOCUS_05340	sequence1:561124..562881(+)	frameshift,internal_stop_codon	562879..562881(+)	562926	WP_010706747.1	DUF1116 domain-containing protein	99.5	57.9	55.7
MGA_535	LOCUS_05350	sequence1:562913..564172(+)	frameshift,internal_stop_codon	562879..562881(+)	562926	WP_010706747.1	DUF1116 domain-containing protein	98.1	41.3	66.4
MGA_536	LOCUS_05360	sequence1:564364..565242(+)	partial			WP_002355250.1	DUF2877 domain-containing protein	40.1	41.2	35.0
MGA_563	LOCUS_05630	sequence1:593797..594759(-)	partial			WP_003722812.1	glycerophosphodiester phosphodiesterase	77.2	42.0	31.9
MGA_609	LOCUS_06090	sequence1:640535..640831(-)	partial			WP_011393129.1	helix-turn-helix transcriptional regulator	83.7	27.3	31.7
MGA_626	LOCUS_06260	sequence1:658162..658800(+)	partial			WP_003732646.1	WxL domain-containing protein	73.1	70.5	35.1
MGA_630	LOCUS_06300	sequence1:663246..663596(+)	frameshift		663709	WP_012545085.1	tyrosine recombinase XerC	97.4	37.5	31.9
MGA_700	LOCUS_07000	sequence1:736718..736993(-)	partial			WP_011222020.1	metalloregulator ArsR/SmtB family transcription factor	95.6	73.1	57.5
MGA_707	LOCUS_07070	sequence1:742140..743204(-)	partial			WP_010980356.1	3-dehydroquinate synthase	38.4	38.4	28.6
MGA_730	LOCUS_07300	sequence1:764294..764554(-)	internal_stop_codon	764600..764602(-)		WP_009966453.1	two-component system response regulator YcbL	94.2	35.8	50.6
MGA_748	LOCUS_07480	sequence1:784347..784658(-)	partial			WP_003642288.1	cupin domain-containing protein	98.1	74.3	71.3
MGA_751	LOCUS_07510	sequence1:786908..787276(-)	partial			WP_003722088.1	MerR family transcriptional regulator	90.2	72.8	48.2
MGA_763	LOCUS_07630	sequence1:794813..795166(+)	partial			WP_011888953.1	site-specific integrase	93.2	31.4	43.7
MGA_793	LOCUS_07930	sequence1:826567..826782(-)	partial			WP_002287365.1	DNA-directed RNA polymerase subunit omega	90.1	63.4	64.1
MGA_797	LOCUS_07970	sequence1:828670..829830(-)	internal_stop_codon	829843..829845(-)		WP_002287350.1	patatin-like phospholipase family protein	99.2	64.3	30.0
MGA_798	LOCUS_07980	sequence1:829843..830040(-)	internal_stop_codon	829843..829845(-)		WP_002287350.1	patatin-like phospholipase family protein	75.4	8.7	77.6
MGA_841	LOCUS_08410	sequence1:875949..877019(-)	partial			WP_002263525.1	transcription antiterminator	97.2	63.6	25.1
MGA_881	LOCUS_08810	sequence1:924114..925109(-)	partial			WP_011837195.1	glycoside hydrolase family 25 protein	55.3	68.8	45.4
MGA_884	LOCUS_08840	sequence1:926593..926949(+)	partial			WP_010905339.1	S24 family peptidase	78.8	32.7	39.8
MGA_912	LOCUS_09120	sequence1:953058..954149(-)	partial			WP_001097917.1	AraC family transcriptional regulator	63.1	55.5	31.9
MGA_926	LOCUS_09260	sequence1:969845..970816(-)	partial			WP_010905725.1	phage tail spike protein	43.7	16.7	37.0
MGA_952	LOCUS_09520	sequence1:992007..992513(-)	frameshift		992554	WP_002287951.1	HAD family phosphatase	89.3	69.1	46.0
MGA_992	LOCUS_09920	sequence1:1031022..1031375(-)	partial			WP_011837061.1	hypothetical protein	52.1	45.1	54.7
MGA_1003	LOCUS_10030	sequence1:1036130..1036387(-)	frameshift		1036385	WP_000595037.1	hypothetical protein	98.8	61.5	53.1
MGA_1004	LOCUS_10040	sequence1:1036374..1036568(-)	frameshift		1036385	WP_000595037.1	hypothetical protein	92.2	37.8	62.7
MGA_1008	LOCUS_10080	sequence1:1038318..1038599(+)	frameshift		1038548	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_1009	LOCUS_10090	sequence1:1038635..1039459(+)	frameshift		1038548	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_1010	LOCUS_10100	sequence1:1039484..1040830(-)	partial			WP_010989332.1	toxin	66.1	50.0	34.9
MGA_1019	LOCUS_10190	sequence1:1049315..1052665(-)	partial			WP_010989329.1	type VII secretion protein EsaA	28.3	29.9	37.6
MGA_1080	LOCUS_10800	sequence1:1113682..1114188(-)	internal_stop_codon	1114201..1114203(-)		WP_003246662.1	alpha/beta hydrolase	97.6	58.7	41.8
MGA_1084	LOCUS_10840	sequence1:1119844..1120167(+)	frameshift		1120261,1119826,1120066,1120406	WP_011101803.1	site-specific integrase	87.9	23.1	50.0
MGA_1101	LOCUS_11010	sequence1:1137165..1139900(-)	partial			WP_011101414.1	DNA translocase FtsK	51.9	47.5	66.8
MGA_1128	LOCUS_11280	sequence1:1168181..1169800(-)	partial			WP_010989982.1	lmo2396 family class 1 internalin	86.8	50.9	38.6
MGA_1165	LOCUS_11650	sequence1:1217429..1218892(-)	partial			WP_002371849.1	N-acetylglucosamine-specific PTS transporter subunit IIBC	99.6	72.8	65.2
MGA_1182	LOCUS_11810	sequence1:1243984..1244226(-)	partial			WP_000354127.1	phage holin	92.5	49.7	35.1
MGA_1184	LOCUS_11830	sequence1:1244501..1245901(-)	partial			WP_227011156.1	pyocin knob domain-containing protein	74.9	51.1	37.4
MGA_1192	LOCUS_11910	sequence1:1250130..1255160(-)	partial			WP_010774207.1	peptidoglycan endopeptidase EnpA	42.5	42.0	38.9
MGA_1206	LOCUS_12050	sequence1:1262069..1262350(+)	frameshift		1262299	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_1207	LOCUS_12060	sequence1:1262386..1263210(+)	frameshift		1262299	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_1223	LOCUS_12220	sequence1:1275111..1275359(-)	partial			WP_002399578.1	DUF3850 domain-containing protein	91.5	39.7	54.7
MGA_1251	LOCUS_12500	sequence1:1286931..1287854(+)	partial			WP_115413024.1	Ltp family lipoprotein	46.3	43.8	51.0
MGA_1253	LOCUS_12520	sequence1:1288270..1289091(+)	partial			WP_163911759.1	toll/interleukin-1 receptor domain-containing protein	49.1	28.1	41.5
MGA_1289	LOCUS_12880	sequence1:1328422..1330701(-)	partial			WP_015705665.1	helix-turn-helix domain-containing protein	12.9	12.8	37.8
MGA_1298	LOCUS_12970	sequence1:1338265..1338471(+)	partial			WP_010989493.1	LysR family transcriptional regulator	98.5	22.2	61.2
MGA_1310	LOCUS_13090	sequence1:1348600..1349124(+)	internal_stop_codon	1349122..1349124(+)		WP_011987096.1	excinuclease ABC subunit UvrA	100.0	23.1	65.5
MGA_1311	LOCUS_13100	sequence1:1349209..1350849(+)	internal_stop_codon	1349122..1349124(+)		WP_011987096.1	excinuclease ABC subunit UvrA	97.1	70.7	46.9
MGA_1313	LOCUS_13120	sequence1:1351458..1352177(-)	partial			WP_012775247.1	DUF3955 domain-containing protein	33.5	50.6	36.2
MGA_1322	LOCUS_13210	sequence1:1360303..1360635(-)	internal_stop_codon	1360303..1360305(-)		WP_001009368.1	hypothetical protein	84.5	61.6	33.7
MGA_1343	LOCUS_13420	sequence1:1378301..1378540(-)	frameshift		1378611	WP_003732615.1	aldo/keto reductase family oxidoreductase	100.0	25.9	74.7
MGA_1344	LOCUS_13430	sequence1:1378591..1379217(-)	frameshift		1378611	WP_003732615.1	aldo/keto reductase family oxidoreductase	97.1	66.2	70.3
MGA_1346	LOCUS_13450	sequence1:1379960..1380394(-)	partial			WP_002389274.1	hypothetical protein	43.8	81.9	47.1
MGA_1354	LOCUS_13530	sequence1:1388307..1388849(-)	partial			WP_003575983.1	restriction endonuclease	66.1	63.6	46.2
MGA_1406	LOCUS_14050	sequence1:1444684..1445184(-)	partial			WP_010990030.1	DUF4003 family protein	93.4	46.3	36.8
MGA_1422	LOCUS_14210	sequence1:1460689..1461198(-)	partial			WP_003575983.1	restriction endonuclease	72.8	65.8	45.5
MGA_1506	LOCUS_15050	sequence1:1548671..1550791(+)	partial			WP_168488820.1	CDP-glycerol glycerophosphotransferase family protein	76.2	46.0	28.0
MGA_1513	LOCUS_15120	sequence1:1556355..1556816(-)	partial			WP_002372290.1	NUDIX hydrolase	94.8	52.4	53.1
MGA_1514	LOCUS_15130	sequence1:1557110..1557358(-)	partial			WP_002289327.1	NUDIX hydrolase	86.6	26.0	66.2
MGA_1526	LOCUS_15250	sequence1:1568104..1569396(-)	partial			WP_010959211.1	GHKL domain-containing protein	70.9	70.9	33.5
MGA_1543	LOCUS_15420	sequence1:1584843..1586258(-)	partial			WP_004399426.1	peptidase G2 autoproteolytic cleavage domain-containing protein	83.0	48.4	41.7
MGA_1558	LOCUS_15570	sequence1:1601234..1605325(-)	partial			WP_147628756.1	MucBP domain-containing protein	97.4	52.3	26.1
MGA_1560	LOCUS_15590	sequence1:1607009..1608883(-)	partial			WP_003549854.1	C40 family peptidase	13.3	32.1	29.8
MGA_1561	LOCUS_15600	sequence1:1608919..1610859(-)	partial			WP_000873739.1	M15 family metallopeptidase	24.6	52.0	31.5
MGA_1574	LOCUS_15730	sequence1:1621419..1621712(-)	internal_stop_codon	1621782..1621784(-)		WP_002356319.1	threonine--tRNA ligase	97.9	14.7	50.5
MGA_1575	LOCUS_15740	sequence1:1621782..1623356(-)	internal_stop_codon	1621782..1621784(-)		WP_002356319.1	threonine--tRNA ligase	99.4	81.1	65.8
MGA_1596	LOCUS_15950	sequence1:1645214..1645429(+)	partial			WP_064496534.1	universal stress protein	84.5	41.1	40.0
MGA_1601	LOCUS_16000	sequence1:1652299..1652892(-)	partial			WP_003426957.1	glycerol-3-phosphate 1-O-acyltransferase PlsY	74.6	74.0	36.4
MGA_1608	LOCUS_16070	sequence1:1662345..1663406(+)	partial			WP_011101863.1	SH3 domain-containing protein	52.1	23.7	55.9
MGA_1609	LOCUS_16080	sequence1:1663429..1664304(+)	partial			WP_225355414.1	C40 family peptidase	38.5	21.6	64.3
MGA_1635	LOCUS_16340	sequence1:1690246..1691106(+)	partial			WP_012775008.1	efflux RND transporter periplasmic adaptor subunit	82.9	63.4	28.4
MGA_1639	LOCUS_16380	sequence1:1693990..1694658(-)	partial			WP_011861379.1	ABC transporter ATP-binding protein	98.2	74.0	27.1
MGA_1675	LOCUS_16720	sequence1:1739971..1740741(+)	partial			WP_003571475.1	hypothetical protein	45.7	47.0	33.6
MGA_1682	LOCUS_16790	sequence1:1744797..1746101(+)	partial			WP_003728914.1	metal ABC transporter substrate-binding protein	47.7	68.1	57.7
MGA_1697	LOCUS_16940	sequence1:1759891..1760859(+)	partial			WP_010774241.1	DUF6056 family protein	40.1	47.5	31.0
MGA_1772	LOCUS_17670	sequence1:1849256..1849798(-)	internal_stop_codon	1849802..1849804(-),1849817..1849819(-)		WP_003723741.1	bifunctional tRNA lysidine(34) synthetase TilS/hypoxanthine phosphoribosyltransferase HprT	99.4	27.6	77.7
MGA_1777	LOCUS_17720	sequence1:1852965..1854026(-)	partial			WP_000014237.1	nucleoside triphosphate pyrophosphohydrolase	98.6	71.8	44.8
MGA_1819	LOCUS_18140	sequence1:1899432..1900253(-)	partial			WP_000041421.1	DUF4430 domain-containing protein	65.2	65.1	32.6
MGA_1829	LOCUS_18240	sequence1:1914383..1916866(-)	partial			WP_002386956.1	MucBP domain-containing protein	49.2	57.5	28.2
MGA_1838	LOCUS_18330	sequence1:1925381..1925899(+)	frameshift,internal_stop_codon	1925840..1925842(+)	1925827	WP_011836826.1	2-dehydropantoate 2-reductase N-terminal domain-containing protein	86.0	48.4	43.7
MGA_1865	LOCUS_18600	sequence1:1953972..1954370(+)	partial			WP_003227084.1	YxeA family protein	63.6	72.2	51.2
MGA_1883	LOCUS_18780	sequence1:1973713..1974234(-)	partial			WP_003731691.1	glutamate:gamma-aminobutyrate antiporter	87.9	31.9	69.5
MGA_1885	LOCUS_18800	sequence1:1975856..1976872(-)	partial			WP_003731691.1	glutamate:gamma-aminobutyrate antiporter	97.0	67.9	70.7
MGA_1895	LOCUS_18900	sequence1:1987559..1988275(-)	partial			WP_003231267.1	3D domain-containing protein	84.9	72.8	28.9
MGA_1901	LOCUS_18960	sequence1:1994327..1995031(-)	partial			WP_002385709.1	WxL domain-containing protein ElrC	83.3	72.3	32.0
MGA_1903	LOCUS_18980	sequence1:1995827..1996531(-)	partial			WP_002362542.1	WxL domain-containing protein ElrD	77.4	74.4	37.3
MGA_1907	LOCUS_19020	sequence1:1998444..2002346(-)	partial			WP_010905889.1	Ig-like domain-containing protein	27.8	45.8	26.4
MGA_1947	LOCUS_19420	sequence1:2052756..2054756(+)	partial			WP_011836823.1	GbpC/Spa domain-containing protein	53.6	26.8	25.6
MGA_1955	LOCUS_19500	sequence1:2062701..2062976(-)	partial			WP_002294234.1	chorismate mutase	92.3	30.0	40.5
MGA_1960	LOCUS_19550	sequence1:2066255..2068783(-)	partial			WP_011102168.1	cell surface protein	42.0	56.3	30.9
MGA_2008	LOCUS_20010	sequence1:2130772..2132211(+)	partial			WP_010773705.1	helix-turn-helix domain-containing protein	50.7	50.8	28.0
MGA_2014	LOCUS_20070	sequence1:2143190..2144167(-)	partial			WP_003732646.1	WxL domain-containing protein	49.2	72.6	35.6
MGA_2055	LOCUS_20480	sequence1:2192642..2193388(+)	partial			WP_185847435.1	GHKL domain-containing protein	100.0	57.1	85.9
MGA_2065	LOCUS_20580	sequence1:2201634..2205707(-)	frameshift,internal_stop_codon	2201679..2201681(-)	2201648,2201666,2201651,2201699,2201657	WP_011837563.1	Cna B-type domain-containing protein	62.1	55.9	28.7
MGA_2091	LOCUS_20840	sequence1:2238501..2240744(-)	partial			WP_011101409.1	WxL domain-containing protein	26.0	16.8	41.8
MGA_2095	LOCUS_20880	sequence1:2243853..2244545(-)	partial			WP_002355609.1	WxL domain-containing protein	73.9	75.2	39.0
MGA_2096	LOCUS_20890	sequence1:2244568..2245233(-)	partial			WP_003577370.1	WxL domain-containing protein	69.7	66.1	31.8
MGA_2102	LOCUS_20950	sequence1:2251338..2251766(+)	internal_stop_codon	2251332..2251334(+)		WP_011475788.1	ISL3 family transposase	95.8	32.2	37.7
MGA_2103	LOCUS_20960	sequence1:2252063..2253322(-)	partial			WP_225355414.1	C40 family peptidase	29.4	23.5	53.7
MGA_2104	LOCUS_20970	sequence1:2253406..2254773(-)	partial			WP_011101863.1	SH3 domain-containing protein	33.4	19.4	65.8
MGA_2105	LOCUS_20980	sequence1:2255692..2257677(+)	internal_stop_codon	2257675..2257677(+)		WP_013389449.1	glycoside hydrolase N-terminal domain-containing protein	26.9	9.1	33.5
MGA_2145	LOCUS_21380	sequence1:2298473..2298841(-)	partial			WP_013228548.1	MarR family transcriptional regulator	82.0	64.1	32.0
MGA_2154	LOCUS_21470	sequence1:2308238..2312518(-)	partial			WP_147628756.1	MucBP domain-containing protein	57.8	34.0	25.3
MGA_2156	LOCUS_21490	sequence1:2314519..2316471(-)	partial			WP_011674154.1	DUF5011 domain-containing protein	20.5	24.1	33.6
MGA_2180	LOCUS_21730	sequence1:2342389..2342820(+)	frameshift		2342808	WP_047813471.1	alpha/beta hydrolase	97.9	42.9	72.1
MGA_2181	LOCUS_21740	sequence1:2342825..2343319(+)	frameshift		2342808	WP_047813471.1	alpha/beta hydrolase	100.0	50.3	58.5
MGA_2186	LOCUS_21790	sequence1:2345005..2345901(+)	partial			WP_009933212.1	hypothetical protein	80.5	62.5	25.8
MGA_2193	LOCUS_21860	sequence1:2351841..2352077(+)	internal_stop_codon	2351601..2351603(+)		WP_000639830.1	GNAT family protein	92.3	38.5	54.2
MGA_2195	LOCUS_21880	sequence1:2352368..2352994(-)	partial			WP_003548923.1	helix-turn-helix transcriptional regulator	51.9	33.0	34.3
MGA_2203	LOCUS_21960	sequence1:2359463..2360326(+)	partial			WP_002371451.1	hypothetical protein	79.8	73.1	33.9
MGA_2233	LOCUS_22260	sequence1:2398678..2399334(+)	partial			WP_002355609.1	WxL domain-containing protein	75.7	73.2	29.3
MGA_2252	LOCUS_22450	sequence1:2422581..2422823(-)	frameshift		2422837	WP_031837637.1	recombinase family protein	92.5	41.0	45.3
MGA_2253	LOCUS_22460	sequence1:2422820..2423146(-)	frameshift		2422834	WP_000904930.1	recombinase family protein	95.4	55.4	46.6
MGA_2254	LOCUS_22470	sequence1:2423553..2425541(+)	partial			WP_003721852.1	MucBP domain-containing protein	70.8	74.5	45.5
MGA_2261	LOCUS_22540	sequence1:2433054..2433839(+)	partial			WP_002355609.1	WxL domain-containing protein	73.2	75.6	54.7
MGA_2269	LOCUS_22620	sequence1:2439643..2440716(+)	partial			WP_011141720.1	saccharopine dehydrogenase NADP-binding domain-containing protein	62.2	63.4	25.0
MGA_2282	LOCUS_22750	sequence1:2456016..2457524(-)	partial			WP_001205278.1	virulence factor transcriptional regulator MgaSpn	64.3	64.1	20.4
MGA_2302	LOCUS_22950	sequence1:2477118..2478542(-)	partial			WP_003721643.1	beta-glucoside-specific PTS transporter subunit IIABC	98.7	73.2	64.7
MGA_2319	LOCUS_23120	sequence1:2495732..2496070(+)	partial			WP_002286060.1	ABC transporter ATP-binding protein	92.0	44.3	60.2
MGA_2321	LOCUS_23140	sequence1:2497716..2498150(+)	partial			WP_002296462.1	ABC transporter ATP-binding protein	95.8	61.7	66.7
MGA_2367	LOCUS_23600	sequence1:2544238..2544780(-)	partial			WP_012546828.1	A24 family peptidase	93.3	70.0	31.1
MGA_2464	LOCUS_24550	sequence1:2630257..2630652(-)	partial			WP_010905682.1	helix-turn-helix domain-containing protein	90.8	63.3	59.0
MGA_2465	LOCUS_24560	sequence1:2630814..2630972(+)	partial			WP_010905683.1	DUF739 family protein	100.0	66.7	71.2
MGA_2466	LOCUS_24570	sequence1:2630969..2631793(-)	frameshift		2631879	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_2467	LOCUS_24580	sequence1:2631829..2632110(-)	frameshift		2631879	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_2468	LOCUS_24590	sequence1:2632133..2632306(+)	partial			WP_010905683.1	DUF739 family protein	70.2	55.6	60.0
MGA_2490	LOCUS_24810	sequence1:2642362..2643186(-)	frameshift		2643272	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_2491	LOCUS_24820	sequence1:2643222..2643503(-)	frameshift		2643272	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_2503	LOCUS_24940	sequence1:2650497..2651714(+)	partial			WP_002296485.1	phage major capsid protein	73.8	58.8	43.7
MGA_2511	LOCUS_25020	sequence1:2654865..2660786(+)	partial			WP_010905926.1	phage tail tape measure protein	32.8	42.2	28.8
MGA_2514	LOCUS_25050	sequence1:2662786..2663172(+)	partial			WP_000682783.1	G5 domain-containing protein	34.4	1.7	70.5
MGA_2521	LOCUS_25120	sequence1:2665513..2666562(+)	partial			WP_081581110.1	N-acetylmuramoyl-L-alanine amidase	49.3	16.2	62.8
MGA_2579	LOCUS_25700	sequence1:2734873..2735313(+)	partial			WP_003723013.1	thioredoxin family protein	69.2	65.0	39.8
MGA_2585	LOCUS_25760	sequence1:2743360..2743806(+)	partial			WP_003721325.1	diguanylate cyclase	89.9	46.8	40.6
MGA_2587	LOCUS_25780	sequence1:2745548..2745955(+)	partial			WP_003721325.1	diguanylate cyclase	100.0	47.9	41.9
MGA_2602	LOCUS_25930	sequence1:2763960..2764553(-)	partial			WP_003228938.1	exo-glucosaminidase LytG	91.9	66.3	46.8
MGA_2612	LOCUS_26030	sequence1:2774408..2775508(+)	partial			WP_011674815.1	hypothetical protein	79.5	74.5	37.8
MGA_2614	LOCUS_26050	sequence1:2776103..2776312(+)	partial			WP_010877980.1	copper-translocating P-type ATPase CopA	92.8	8.0	40.6
MGA_2618	LOCUS_26090	sequence1:2780969..2784730(+)	partial			WP_002286778.1	VWA domain-containing protein	41.3	41.5	27.9
MGA_2625	LOCUS_26160	sequence1:2792341..2792700(+)	partial			WP_002304776.1	GIY-YIG nuclease family protein	65.5	83.0	71.8
MGA_2676	LOCUS_26670	sequence1:2847450..2849585(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	72.0	56.3	32.5
MGA_2677	LOCUS_26680	sequence1:2849631..2851436(+)	partial			WP_010989363.1	LPXTG cell wall anchor domain-containing protein	43.8	35.8	36.4
MGA_2680	LOCUS_26710	sequence1:2853310..2855886(-)	partial			WP_157860128.1	lectin like domain-containing protein	36.2	48.7	31.5
MGA_2683	LOCUS_26740	sequence1:2857178..2860030(+)	frameshift		2860009	WP_002287819.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	99.1	76.3	71.9
MGA_2684	LOCUS_26750	sequence1:2860065..2860736(+)	frameshift		2860012	WP_010706520.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	100.0	18.1	79.4
MGA_2697	LOCUS_26880	sequence1:2877404..2877832(+)	frameshift,internal_stop_codon	2877719..2877721(+)	2877706	WP_012582957.1	glycosyltransferase family 4 protein	68.3	26.0	34.7
MGA_2698	LOCUS_26890	sequence1:2877838..2878569(+)	frameshift,internal_stop_codon	2877719..2877721(+)	2877706	WP_012582957.1	glycosyltransferase family 4 protein	96.3	62.2	33.6
MGA_2709	LOCUS_27000	sequence1:2888631..2889455(-)	frameshift		2889541	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_2710	LOCUS_27010	sequence1:2889491..2889772(-)	frameshift		2889541	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_2711	LOCUS_27020	sequence1:2889945..2893862(+)	partial			WP_011109597.1	Ig-like domain-containing protein	52.0	41.1	23.1
MGA_2719	LOCUS_27100	sequence1:2901302..2902003(+)	partial			WP_002386939.1	WxL domain-containing protein	72.1	76.3	28.5
MGA_2721	LOCUS_27120	sequence1:2903194..2904636(-)	partial			WP_002383114.1	helix-turn-helix domain-containing protein	55.6	54.7	23.0
MGA_2725	LOCUS_27160	sequence1:2906958..2909921(+)	partial			WP_005902649.1	leucine-rich repeat domain-containing protein	12.6	62.9	31.5
MGA_2729	LOCUS_27200	sequence1:2913038..2916217(+)	partial			WP_207215633.1	MucBP domain-containing protein	24.0	22.5	38.0
MGA_2782	LOCUS_27730	sequence1:2977769..2978719(+)	partial			WP_002387476.1	family 20 glycosylhydrolase	94.0	35.9	41.7
MGA_2784	LOCUS_27750	sequence1:2981033..2982355(+)	partial			WP_003721852.1	MucBP domain-containing protein	38.6	25.7	41.9
MGA_2787	LOCUS_27780	sequence1:2983661..2984245(+)	frameshift		2984236	WP_000176119.1	ABC transporter permease	97.4	29.1	31.7
MGA_2788	LOCUS_27790	sequence1:2984205..2985575(+)	frameshift		2984230	WP_010989900.1	ABC transporter permease	96.3	69.7	26.3
MGA_2805	LOCUS_27960	sequence1:3008142..3011120(+)	partial			WP_002365407.1	WxL domain-containing protein	19.8	78.7	40.8
MGA_2856	LOCUS_28470	sequence1:3055620..3056057(+)	partial			WP_011948333.1	helix-turn-helix transcriptional regulator	66.2	80.8	34.3
MGA_2859	LOCUS_28500	sequence1:3058227..3058964(-)	partial			WP_003596039.1	helix-turn-helix domain-containing protein	40.0	48.8	41.2
MGA_2861	LOCUS_28520	sequence1:3059398..3059946(-)	frameshift		3059954	WP_002291207.1	multidrug efflux MFS transporter EfmA	98.4	41.8	67.6
MGA_2862	LOCUS_28530	sequence1:3059952..3060665(-)	frameshift		3059954	WP_002291207.1	multidrug efflux MFS transporter EfmA	97.9	54.7	69.7
MGA_2893	LOCUS_28840	sequence1:3092803..3093906(+)	partial			WP_011476432.1	zinc ribbon domain-containing protein	25.1	20.2	34.0
MGA_2955	LOCUS_29460	sequence1:3151489..3151899(-)	partial			WP_011337174.1	CPBP family intramembrane metalloprotease	93.4	52.5	43.8
MGA_2962	LOCUS_29530	sequence1:3159245..3159616(-)	partial			WP_011836350.1	helix-turn-helix transcriptional regulator	56.9	45.3	44.3
MGA_2964	LOCUS_29550	sequence1:3160782..3164714(+)	partial			WP_002296199.1	Ig-like domain-containing protein	42.0	56.0	27.4
MGA_2965	LOCUS_29560	sequence1:3165108..3169211(+)	partial			WP_002296199.1	Ig-like domain-containing protein	42.3	57.0	31.5
MGA_2992	LOCUS_29830	sequence1:3192621..3193940(+)	partial			WP_011101863.1	SH3 domain-containing protein	60.4	33.9	43.5
MGA_3004	LOCUS_29950	sequence1:3204166..3204339(+)	frameshift,internal_stop_codon	3204118..3204120(+)	3204309	WP_011476099.1	glycosyltransferase family 4 protein	91.2	14.2	50.0
MGA_3005	LOCUS_29960	sequence1:3204327..3205040(+)	frameshift,internal_stop_codon	3204118..3204120(+)	3204309	WP_011476099.1	glycosyltransferase family 4 protein	94.1	61.9	39.6
MGA_3008	LOCUS_29990	sequence1:3207320..3207652(+)	frameshift		3207646	WP_003228257.1	glycosyltransferase family 1 protein	80.0	23.2	47.2
MGA_3009	LOCUS_30000	sequence1:3207700..3208419(+)	partial			WP_011476426.1	glycosyltransferase family 1 protein	95.8	63.8	37.7
MGA_3033	LOCUS_30240	sequence1:3237401..3237874(+)	partial			WP_002369291.1	phosphoribosyltransferase family protein	99.4	67.5	42.3
MGA_3063	LOCUS_30540	sequence1:3269962..3270393(+)	partial			WP_009930948.1	hypothetical protein	91.6	26.1	37.4
MGA_3071	LOCUS_30620	sequence1:3278701..3279630(+)	partial			WP_001148136.1	SH3 domain-containing protein	61.5	39.1	38.5
MGA_3072	LOCUS_30630	sequence1:3280661..3281608(+)	partial			WP_010905391.1	peptidoglycan amidohydrolase family protein	48.3	61.0	48.4
MGA_3124	LOCUS_31150	sequence1:3327157..3327981(-)	frameshift		3328067	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_3125	LOCUS_31160	sequence1:3328017..3328298(-)	frameshift		3328067	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_3126	LOCUS_31170	sequence1:3328399..3328809(+)	partial			WP_002383816.1	helix-turn-helix domain-containing protein	64.0	56.2	48.3
MGA_3130	LOCUS_31210	sequence1:3331906..3333063(+)	partial			WP_081708749.1	polymorphic toxin type 50 domain-containing protein	93.0	74.5	38.2
MGA_3143	LOCUS_31340	sequence1:3339001..3341679(+)	partial			WP_000224695.1	hypothetical protein	73.8	79.9	11.5
MGA_3194	LOCUS_31850	sequence1:3389854..3389979(+)	internal_stop_codon	3389851..3389853(+),3389977..3389979(+)		WP_011254551.1	UTP--glucose-1-phosphate uridylyltransferase GalU	100.0	13.9	78.0
MGA_3201	LOCUS_31920	sequence1:3394414..3394743(+)	partial			WP_011476418.1	LCP family protein	97.2	32.4	53.8
MGA_3215	LOCUS_32060	sequence1:3408405..3409907(+)	partial			WP_002383114.1	helix-turn-helix domain-containing protein	38.2	38.1	24.4
MGA_3222	LOCUS_32130	sequence1:3416453..3416971(+)	frameshift,internal_stop_codon	3416849..3416851(+)	3416845	WP_012775656.1	alpha-glucosidase	76.2	24.3	63.4
MGA_3223	LOCUS_32140	sequence1:3416959..3418149(+)	frameshift		3416854	WP_011254601.1	alpha-glucosidase	98.7	69.5	40.1
MGA_3237	LOCUS_32270	sequence1:3439833..3441281(+)	partial			WP_005064102.1	L,D-transpeptidase family protein	33.0	69.7	42.6
MGA_3239	LOCUS_32290	sequence1:3441666..3443570(+)	partial			WP_010905155.1	SpaA isopeptide-forming pilin-related protein	50.3	16.5	25.7
MGA_3244	LOCUS_32340	sequence1:3447248..3447475(+)	partial			WP_002399578.1	DUF3850 domain-containing protein	97.3	39.1	50.7
MGA_3257	LOCUS_32470	sequence1:3458369..3458593(+)	frameshift,internal_stop_codon	3458271..3458273(+)	3458297	WP_001036635.1	hypothetical protein	89.2	35.5	42.4
MGA_3259	LOCUS_32490	sequence1:3459426..3461204(+)	partial			WP_002382226.1	SpaA isopeptide-forming pilin-related protein	73.1	70.4	35.4
MGA_3292	LOCUS_32820	sequence1:3492697..3494229(+)	partial			WP_011837580.1	M protein trans-acting positive regulator PRD domain-containing protein	49.4	47.5	25.1
MGA_3297	LOCUS_32870	sequence1:3500983..3501798(+)	partial			WP_002288559.1	WxL domain-containing protein	62.0	63.9	30.6
MGA_3317	LOCUS_33070	sequence1:3522075..3523241(+)	partial			WP_011101689.1	competence protein CoiA family protein	69.8	72.0	33.9
MGA_3325	LOCUS_33150	sequence1:3531204..3532205(+)	partial			WP_010989623.1	MBL fold metallo-hydrolase	79.3	68.6	45.1
MGA_3353	LOCUS_33430	sequence1:3561641..3562693(+)	partial			WP_003733946.1	peptidoglycan N-acetylglucosamine deacetylase PgdA	79.1	62.4	41.6
MGA_3355	LOCUS_33450	sequence1:3563498..3564091(+)	partial			WP_010989534.1	DUF3267 domain-containing protein	58.4	66.7	45.4
MGA_3401	LOCUS_33910	sequence1:3616244..3616627(-)	frameshift		3616710	WP_003242661.1	prolipoprotein diacylglyceryl transferase	89.8	42.4	57.0
MGA_3402	LOCUS_33920	sequence1:3616678..3617037(-)	frameshift		3616710	WP_003242661.1	prolipoprotein diacylglyceryl transferase	98.3	43.5	45.3
MGA_3404	LOCUS_33940	sequence1:3617895..3618398(+)	frameshift		3618317	WP_032910596.1	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	79.0	18.0	44.1
MGA_3405	LOCUS_33950	sequence1:3618329..3619114(+)	frameshift		3618314	WP_002287901.1	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	97.7	34.2	38.9
MGA_3406	LOCUS_33960	sequence1:3619181..3619540(+)	internal_stop_codon	3619538..3619540(+)		WP_000103844.1	CopY/TcrY family copper transport repressor	93.3	75.0	45.0
MGA_3407	LOCUS_33970	sequence1:3619630..3620211(+)	frameshift		3620305,3620226,3620166	WP_011461874.1	heavy metal translocating P-type ATPase	92.7	21.6	47.5
MGA_3408	LOCUS_33980	sequence1:3620327..3620620(+)	frameshift		3620305,3620229,3620166,3620633,3620649,3620606	WP_011461874.1	heavy metal translocating P-type ATPase	95.9	11.4	66.7
MGA_3430	LOCUS_34180	sequence3:267..680(-)	frameshift		100,673,124,313	WP_010990058.1	ABC transporter ATP-binding protein	87.6	20.9	60.8
MGA_3431	LOCUS_34190	sequence3:608..988(-)	frameshift		673	WP_010990058.1	ABC transporter ATP-binding protein	77.0	16.9	53.6
MGA_3470	LOCUS_34560	sequence4:20636..21886(+)	partial			WP_002390104.1	isopeptide-forming domain-containing fimbrial protein	95.9	63.6	30.9
MGA_3473	LOCUS_34590	sequence4:23685..24509(-)	frameshift		24595	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_3474	LOCUS_34600	sequence4:24545..24826(-)	frameshift		24595	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_3475	LOCUS_34610	sequence4:24911..26704(+)	partial			WP_002379133.1	isopeptide-forming domain-containing fimbrial protein	83.4	48.8	26.5
MGA_3493	LOCUS_34790	sequence4:42012..43157(+)	partial			WP_001195144.1	bifunctional lysozyme/C40 family peptidase	68.0	71.1	36.9
MGA_3495	LOCUS_34810	sequence4:43757..44581(-)	frameshift		44667	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_3496	LOCUS_34820	sequence4:44617..44898(-)	frameshift		44667	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_3520	LOCUS_35060	sequence4:69074..69898(-)	frameshift		69984	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_3521	LOCUS_35070	sequence4:69934..70215(-)	frameshift		69984	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_3522	LOCUS_35080	sequence4:70308..70781(+)	partial			WP_164922268.1	DNA repair protein RadC	85.4	43.6	45.7
MGA_3524	LOCUS_35100	sequence4:71462..71884(+)	partial			WP_011948039.1	cupin domain-containing protein	98.6	63.0	56.5
MGA_3528	LOCUS_35140	sequence4:75801..76223(-)	frameshift		76242	WP_002290383.1	tyrosine-type recombinase/integrase	99.3	76.1	55.0
MGA_3531	LOCUS_35170	sequence4:79114..79761(-)	partial			WP_015613330.1	prolipoprotein diacylglyceryl transferase	84.2	64.5	54.7
MGA_3538	LOCUS_35240	sequence4:83293..83613(+)	partial			WP_002498952.1	plasmid mobilization relaxosome protein MobC	84.0	73.2	55.9
MGA_3544	LOCUS_35300	sequence4:91409..92026(-)	frameshift		92118	WP_002387329.1	ABC transporter permease	96.1	49.0	52.8
MGA_3545	LOCUS_35310	sequence4:92187..92537(-)	frameshift,internal_stop_codon	92253..92255(-),92574..92576(-),92256..92258(-)	92120,92276	WP_002387329.1	ABC transporter permease	69.8	20.1	28.4
MGA_3546	LOCUS_35320	sequence4:92814..93287(-)	frameshift,internal_stop_codon	92698..92700(-)	92673,92924,92758	WP_002365285.1	ABC transporter ATP-binding protein	77.1	54.0	63.6
MGA_3569	LOCUS_35550	sequence5:16036..16185(-)	partial			WP_011837290.1	tagatose-6-phosphate kinase	83.7	13.3	87.8
MGA_3578	LOCUS_35640	sequence5:25095..26207(+)	partial			WP_090936308.1	transposase	99.5	68.7	43.8
MGA_3590	LOCUS_35760	sequence5:36566..37108(+)	partial			WP_000453500.1	IS110 family transposase	86.7	61.7	76.9
MGA_3594	LOCUS_35800	sequence5:39579..40052(+)	partial			WP_164922268.1	DNA repair protein RadC	85.4	43.6	45.7
MGA_3596	LOCUS_35820	sequence5:40733..41155(+)	partial			WP_011948039.1	cupin domain-containing protein	98.6	63.0	56.5
MGA_3601	LOCUS_35870	sequence5:45855..46355(-)	frameshift		45872	WP_000402394.1	helix-turn-helix transcriptional regulator	97.0	83.2	46.1
MGA_3610	LOCUS_35960	sequence5:52155..54338(-)	internal_stop_codon	54342..54344(-)		WP_011222049.1	Tn3 family transposase	99.7	72.7	68.0
MGA_3611	LOCUS_35970	sequence5:54342..55160(-)	internal_stop_codon	54342..54344(-)		WP_011222049.1	Tn3 family transposase	96.7	26.4	55.9
MGA_3622	LOCUS_36080	sequence5:65449..69348(-)	partial			WP_010886402.1	surfactin non-ribosomal peptide synthetase SrfAA	52.7	19.5	32.7
MGA_3634	LOCUS_36200	sequence5:79697..79978(+)	frameshift		79927	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_3635	LOCUS_36210	sequence5:80014..80838(+)	frameshift		79927	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_3652	LOCUS_36380	sequence5:89852..96313(-)	partial			WP_011861367.1	DEAD/DEAH box helicase family protein	77.7	56.8	39.6
MGA_3653	LOCUS_36390	sequence5:96482..98053(-)	partial			WP_011674167.1	ArdC-like ssDNA-binding domain-containing protein	98.3	59.7	31.7
MGA_3655	LOCUS_36410	sequence5:98361..98642(+)	frameshift		98591	WP_165992825.1	IS3 family transposase	88.2	21.5	70.7
MGA_3656	LOCUS_36420	sequence5:98678..99502(+)	frameshift		98591	WP_165992825.1	IS3 family transposase	99.3	71.4	50.0
MGA_3671	LOCUS_36570	sequence5:111062..115684(-)	partial			WP_010989680.1	LPXTG cell wall anchor domain-containing protein	31.4	54.3	32.2
MGA_3683	LOCUS_36690	sequence5:126910..127113(-)	frameshift		127166	WP_000817875.1	tyrosine recombinase XerS	98.5	18.5	60.6
MGA_3684	LOCUS_36700	sequence5:127164..127982(-)	frameshift		127166	WP_000817882.1	tyrosine recombinase XerS	100.0	76.4	50.7
