{ "type": "genome", "identifier": "GCF_000745915.1", "organism": "Deinococcus misasensis DSM 22328", "title": "Deinococcus misasensis DSM 22328", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000745915.1", "bioproject": "PRJNA224116", "biosample": "SAMN02746038", "wgs_master": "JQKG00000000.1", "refseq_category": "reference genome", "taxid": "1121382", "species_taxid": "392413", "organism_name": "Deinococcus misasensis DSM 22328", "infraspecific_name": "strain=DSM 22328", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/28", "asm_name": "ASM74591v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000745915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/745/915/GCF_000745915.1_ASM74591v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5078290", "genome_size_ungapped": "5077429", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "100", "contig_count": "105", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000745915.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4959", "protein_coding_gene_count": "4843", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-28", "dateModified": "2014-08-28", "datePublished": "2014-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus misasensis DSM 22328" ], "sample_taxid": [ "1121382" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Misasa, Tottori (a radioactive site)" ], "sample_host_location_id": [], "data_size": "1.419 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5078290", "Number of Sequences": "100", "Longest Sequences (bp)": "360958", "N50 (bp)": "117101", "Gap Ratio (%)": "0.016955", "GCcontent (%)": "55.2", "Number of CDSs": "4827", "Average Protein Length": "303.7", "Coding Ratio (%)": "86.6", "Number of rRNAs": "4", "Number of tRNAs": "65", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus misasensis", "strain": "strain=DSM 22328", "accession": "GCA_000745915.1", "taxid": 392413, "species_taxid": 392413, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1635, "total_fragments": 1641, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Deinococcus roseus", "strain": "strain=JCM 14370", "accession": "GCA_014646895.1", "taxid": 392414, "species_taxid": 392414, "relation_to_type": "type", "validated": true, "ani": 81.4165, "matched_fragments": 978, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus cellulosilyticus", "strain": "strain=NBRC 106333", "accession": "GCA_007990775.1", "taxid": 401558, "species_taxid": 401558, "relation_to_type": "type", "validated": true, "ani": 81.2893, "matched_fragments": 978, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinobacterium chartae", "strain": "strain=DSM 21458", "accession": "GCA_014202645.1", "taxid": 521158, "species_taxid": 521158, "relation_to_type": "type", "validated": true, "ani": 76.6238, "matched_fragments": 91, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiodurans", "strain": "strain=R1", "accession": "GCA_000008565.1", "taxid": 1299, "species_taxid": 1299, "relation_to_type": "type", "validated": true, "ani": 76.5528, "matched_fragments": 70, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiodurans", "strain": "strain=DSM 20539", "accession": "GCA_000685985.1", "taxid": 1299, "species_taxid": 1299, "relation_to_type": "type", "validated": true, "ani": 76.5148, "matched_fragments": 70, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus arcticus", "strain": "strain=OD32", "accession": "GCA_003028415.1", "taxid": 2136176, "species_taxid": 2136176, "relation_to_type": "type", "validated": true, "ani": 76.2854, "matched_fragments": 90, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus seoulensis", "strain": "strain=JCM 31404", "accession": "GCA_014648115.1", "taxid": 1837379, "species_taxid": 1837379, "relation_to_type": "type", "validated": true, "ani": 76.2711, "matched_fragments": 79, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aquaedulcis", "strain": "strain=SYSU M42101", "accession": "GCA_019693445.1", "taxid": 2840455, "species_taxid": 2840455, "relation_to_type": "type", "validated": true, "ani": 76.227, "matched_fragments": 97, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiophilus", "strain": "strain=ATCC 27603", "accession": "GCA_020889625.1", "taxid": 32062, "species_taxid": 32062, "relation_to_type": "type", "validated": true, "ani": 76.2147, "matched_fragments": 54, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus marmoris", "strain": "strain=DSM 12784", "accession": "GCA_000701405.1", "taxid": 249408, "species_taxid": 249408, "relation_to_type": "type", "validated": true, "ani": 76.2141, "matched_fragments": 87, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiophilus", "strain": "strain=ATCC 27603", "accession": "GCA_003966215.1", "taxid": 32062, "species_taxid": 32062, "relation_to_type": "type", "validated": true, "ani": 76.0956, "matched_fragments": 52, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus sedimenti", "strain": "strain=JCM 31405", "accession": "GCA_014648135.1", "taxid": 1867090, "species_taxid": 1867090, "relation_to_type": "type", "validated": true, "ani": 75.9819, "matched_fragments": 85, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus puniceus", "strain": "strain=DY1", "accession": "GCA_001644565.1", "taxid": 1182568, "species_taxid": 1182568, "relation_to_type": "type", "validated": true, "ani": 75.8885, "matched_fragments": 69, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000745915.1", "gtdb_species": "s__Deinococcus_C misasensis", "ani": 100.0, "matched_fragments": 1635, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014646895.1", "gtdb_species": "s__Deinococcus_C roseus", "ani": 81.4201, "matched_fragments": 976, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Deinococcus", "misasensis", "DSM", "22328" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }