{ "type": "genome", "identifier": "GCF_000745965.1", "organism": "Edaphobacter aggregans DSM 19364", "title": "Edaphobacter aggregans DSM 19364", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000745965.1", "bioproject": "PRJNA224116", "biosample": "SAMN02746092", "wgs_master": "JQKI00000000.1", "refseq_category": "reference genome", "taxid": "1121860", "species_taxid": "570835", "organism_name": "Edaphobacter aggregans DSM 19364", "infraspecific_name": "strain=DSM 19364", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/28", "asm_name": "ASM74596v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000745965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/745/965/GCF_000745965.1_ASM74596v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8177135", "genome_size_ungapped": "8171439", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "345", "contig_count": "356", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000745965.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "7249", "protein_coding_gene_count": "6951", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-28", "dateModified": "2014-08-28", "datePublished": "2014-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Edaphobacter aggregans DSM 19364" ], "sample_taxid": [ "1121860" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany:near W\u00fcrzburg, northern Bavaria" ], "sample_host_location_id": [], "data_size": "2.328 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8177135", "Number of Sequences": "345", "Longest Sequences (bp)": "612934", "N50 (bp)": "76811", "Gap Ratio (%)": "0.069658", "GCcontent (%)": "58.7", "Number of CDSs": "7190", "Average Protein Length": "300.1", "Coding Ratio (%)": "79.2", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Edaphobacter aggregans", "strain": "strain=DSM 19364", "accession": "GCA_000745965.1", "taxid": 570835, 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78.1648, "matched_fragments": 378, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella tundricola", "strain": "strain=MP5ACTX9", "accession": "GCA_000178975.2", "taxid": 940615, "species_taxid": 940615, "relation_to_type": "type", "validated": true, "ani": 78.08, "matched_fragments": 367, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella rosea", "strain": "strain=DSM 18704", "accession": "GCA_900188085.1", "taxid": 474952, "species_taxid": 474952, "relation_to_type": "type", "validated": true, "ani": 78.0011, "matched_fragments": 405, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zavarzinia aquatilis", "strain": "strain=HR-AS", "accession": "GCA_003173035.1", "taxid": 2211142, "species_taxid": 2211142, "relation_to_type": "type", "validated": true, "ani": 75.1843, "matched_fragments": 52, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 75.0302, "matched_fragments": 58, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000745965.1", "gtdb_species": "s__Edaphobacter aggregans", "ani": 100.0, "matched_fragments": 2535, "total_fragments": 2554, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004217555.1", 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