{
    "type": "genome",
    "identifier": "GCF_000745975.1",
    "organism": "Desulfobacter vibrioformis DSM 8776",
    "title": "Desulfobacter vibrioformis DSM 8776",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000745975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02691716",
        "wgs_master": "JQKJ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121398",
        "species_taxid": "34031",
        "organism_name": "Desulfobacter vibrioformis DSM 8776",
        "infraspecific_name": "strain=DSM 8776",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/08/28",
        "asm_name": "ASM74597v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000745975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/745/975/GCF_000745975.1_ASM74597v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4466775",
        "genome_size_ungapped": "4466295",
        "gc_percent": "48.500000",
        "replicon_count": "0",
        "scaffold_count": "86",
        "contig_count": "87",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000745975.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3993",
        "protein_coding_gene_count": "3891",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-08-28",
    "dateModified": "2014-08-28",
    "datePublished": "2014-08-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfobacter vibrioformis DSM 8776"
        ],
        "sample_taxid": [
            "1121398"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Norway:North sea oil platform"
        ],
        "sample_host_location_id": [],
        "data_size": "1.268 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4466775",
        "Number of Sequences": "86",
        "Longest Sequences (bp)": "400161",
        "N50 (bp)": "138923",
        "Gap Ratio (%)": "0.010746",
        "GCcontent (%)": "48.6",
        "Number of CDSs": "3868",
        "Average Protein Length": "338.7",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfobacter vibrioformis",
                "strain": "strain=DSM 8776",
                "accession": "GCA_000745975.1",
                "taxid": 34031,
                "species_taxid": 34031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1439,
                "total_fragments": 1443,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfobacter postgatei",
                "strain": "strain=2ac9",
                "accession": "GCA_000233695.3",
                "taxid": 2293,
                "species_taxid": 2293,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3451,
                "matched_fragments": 791,
                "total_fragments": 1443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter hydrogenophilus",
                "strain": "strain=DSM 3380",
                "accession": "GCA_003261095.1",
                "taxid": 2291,
                "species_taxid": 2291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2739,
                "matched_fragments": 852,
                "total_fragments": 1443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter hydrogenophilus",
                "strain": "strain=AcRS1",
                "accession": "GCA_004319545.1",
                "taxid": 2291,
                "species_taxid": 2291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2353,
                "matched_fragments": 862,
                "total_fragments": 1443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter hydrogenophilus",
                "strain": "strain=DSM 3380",
                "accession": "GCA_010499545.1",
                "taxid": 2291,
                "species_taxid": 2291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.195,
                "matched_fragments": 856,
                "total_fragments": 1443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter curvatus",
                "strain": "strain=DSM 3379",
                "accession": "GCA_000373985.1",
                "taxid": 2290,
                "species_taxid": 2290,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0263,
                "matched_fragments": 925,
                "total_fragments": 1443,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000745975.1",
                "gtdb_species": "s__Desulfobacter vibrioformis",
                "ani": 100.0,
                "matched_fragments": 1439,
                "total_fragments": 1443,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003252055.1",
                "gtdb_species": "s__Desulfobacter postgatei_B",
                "ani": 87.9049,
                "matched_fragments": 553,
                "total_fragments": 1443,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000233695.2",
                "gtdb_species": "s__Desulfobacter postgatei",
                "ani": 86.3586,
                "matched_fragments": 791,
                "total_fragments": 1443,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.23",
                "min_intra_species_ani": "96.02",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_004319545.1",
                "gtdb_species": "s__Desulfobacter hydrogenophilus",
                "ani": 86.219,
                "matched_fragments": 864,
                "total_fragments": 1443,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000373985.1",
                "gtdb_species": "s__Desulfobacter curvatus",
                "ani": 86.0441,
                "matched_fragments": 922,
                "total_fragments": 1443,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013389365.1",
                "gtdb_species": "s__Desulfobacter latus",
                "ani": 85.4778,
                "matched_fragments": 715,
                "total_fragments": 1443,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002747145.1",
                "gtdb_species": "s__Desulfobacter postgatei_A",
                "ani": 84.508,
                "matched_fragments": 351,
                "total_fragments": 1443,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.278,
        "cell_length": 0.653,
        "doubling_h": 1.379,
        "growth_tmp": 30.0,
        "optimum_tmp": 33.0,
        "optimum_ph": 7.125,
        "genome_size": 4466775.0,
        "gc_content": 46.9,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Desulfobacter",
        "vibrioformis",
        "DSM",
        "8776"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}