{ "type": "genome", "identifier": "GCF_000746845.1", "organism": "Altibacter lentus", "title": "Altibacter lentus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000746845.1", "bioproject": "PRJNA224116", "biosample": "SAMN02988278", "wgs_master": "JPZT00000000.1", "refseq_category": "reference genome", "taxid": "1223410", "species_taxid": "1223410", "organism_name": "Altibacter lentus", "infraspecific_name": "strain=JLT2010", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/02", "asm_name": "ASM74684v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_000746845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/746/845/GCF_000746845.1_ASM74684v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3160033", "genome_size_ungapped": "3159238", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000746845.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2960", "protein_coding_gene_count": "2914", "non_coding_gene_count": "42", "pubmed_id": "25342673" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-02", "dateModified": "2014-09-02", "datePublished": "2014-09-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Altibacter lentus" ], "sample_taxid": [ "1223410" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: South China Sea" ], "sample_host_location_id": [], "data_size": "0.894 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3160033", "Number of Sequences": "13", "Longest Sequences (bp)": "3142700", "N50 (bp)": "3142700", "Gap Ratio (%)": "0.025158", "GCcontent (%)": "42.1", "Number of CDSs": "2890", "Average Protein Length": "330.3", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Altibacter lentus", "strain": "strain=JLT2010", "accession": "GCA_000746845.1", "taxid": 1223410, "species_taxid": 1223410, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1048, "total_fragments": 1049, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinirhabdus gelatinilytica", "strain": "strain=DSM 101478", "accession": "GCA_003353425.1", "taxid": 1703343, "species_taxid": 1703343, "relation_to_type": "type", "validated": true, "ani": 78.416, "matched_fragments": 167, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 78.3828, "matched_fragments": 56, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Constantimarinum furrinae", "strain": "strain=ALE3EI", "accession": "GCA_014295415.1", "taxid": 2562285, "species_taxid": 2562285, "relation_to_type": "type", "validated": true, "ani": 77.9039, "matched_fragments": 225, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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