{ "type": "genome", "identifier": "GCF_000746925.1", "organism": "Bacillus clarus", "title": "Bacillus clarus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Los Alamos National Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000746925.1", "bioproject": "PRJNA224116", "biosample": "SAMN02739899", "wgs_master": "JMQC00000000.1", "refseq_category": "reference genome", "taxid": "2338372", "species_taxid": "2338372", "organism_name": "Bacillus clarus", "infraspecific_name": "strain=BHP", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/02", "asm_name": "BHP_1", "asm_submitter": "Los Alamos National Laboratory", "gbrs_paired_asm": "GCA_000746925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/746/925/GCF_000746925.1_BHP_1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5875917", "genome_size_ungapped": "5875917", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000746925.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "6146", "protein_coding_gene_count": "5482", "non_coding_gene_count": "154", "pubmed_id": "25301645" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-02", "dateModified": "2014-09-02", "datePublished": "2014-09-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus clarus" ], "sample_taxid": [ "2338372" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Papua New Guinea" ], "sample_host_location_id": [], "data_size": "1.636 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5875917", "Number of Sequences": "12", "Longest Sequences (bp)": "5068716", "N50 (bp)": "5068716", "Gap Ratio (%)": "0.000051", "GCcontent (%)": "35.3", "Number of CDSs": "6082", "Average Protein Length": "259.7", "Coding Ratio (%)": "80.7", "Number of rRNAs": "42", "Number of tRNAs": "107", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus clarus", "strain": "strain=BHP", "accession": "GCA_000746925.1", "taxid": 2338372, "species_taxid": 2338372, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1950, "total_fragments": 1951, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bacillus clarus", "strain": "strain=PS00077A", "accession": "GCA_003428195.1", "taxid": 2338372, "species_taxid": 2338372, "relation_to_type": "type", "validated": true, "ani": 99.9211, "matched_fragments": 1837, "total_fragments": 1951, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bacillus mycoides", "strain": "strain=ATCC 6462", "accession": "GCA_000832605.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 87.1558, "matched_fragments": 1403, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_000003925.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 86.9955, "matched_fragments": 1406, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 86.94, "matched_fragments": 1399, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus nitratireducens", "strain": "strain=4049", "accession": "GCA_001884135.1", "taxid": 2026193, "species_taxid": 2026193, "relation_to_type": "type", "validated": true, "ani": 86.8972, "matched_fragments": 1347, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus toyonensis", "strain": "strain=BCT-7112", "accession": "GCA_000496285.1", "taxid": 155322, "species_taxid": 155322, "relation_to_type": "type", "validated": true, "ani": 86.5266, "matched_fragments": 1304, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus cereus", "strain": "strain=FSL M8-0473", "accession": "GCA_002014665.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 86.1382, "matched_fragments": 1254, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus sanguinis", "strain": "strain=BML-BC004", "accession": "GCA_018332475.1", "taxid": 2817476, "species_taxid": 2817476, "relation_to_type": "type", "validated": true, "ani": 86.0997, "matched_fragments": 1151, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus cereus", "strain": "strain=ATCC 14579", "accession": "GCA_000007825.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 86.0769, "matched_fragments": 1323, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_000742895.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 86.0623, "matched_fragments": 1307, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_022221345.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 86.0194, "matched_fragments": 1283, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus paranthracis", "strain": "strain=Mn5", "accession": "GCA_001883995.1", "taxid": 2026186, "species_taxid": 2026186, "relation_to_type": "type", "validated": true, "ani": 85.9513, "matched_fragments": 1268, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_000167275.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 85.9135, "matched_fragments": 1270, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus gaemokensis", "strain": "strain=KCTC 13318", "accession": "GCA_001590835.1", "taxid": 574375, "species_taxid": 574375, "relation_to_type": "type", "validated": true, "ani": 84.9485, "matched_fragments": 1308, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus gaemokensis", "strain": "strain=JCM 15801", "accession": "GCA_000712615.1", "taxid": 574375, "species_taxid": 574375, "relation_to_type": "type", "validated": true, "ani": 84.8258, "matched_fragments": 1274, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus cytotoxicus", "strain": "strain=NVH 391-98", "accession": "GCA_000017425.1", "taxid": 580165, "species_taxid": 580165, "relation_to_type": "type", "validated": true, "ani": 83.2196, "matched_fragments": 947, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia alba", "strain": "strain=UniB3", "accession": "GCA_012933555.1", "taxid": 2729105, "species_taxid": 2729105, "relation_to_type": "type", "validated": true, "ani": 78.8238, "matched_fragments": 121, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia vini", "strain": "strain=JCM 19841", "accession": "GCA_016772275.1", "taxid": 1476025, "species_taxid": 1476025, "relation_to_type": "type", "validated": true, "ani": 78.7575, "matched_fragments": 89, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lottiidibacillus patelloidae", "strain": "strain=SA5d-4", "accession": "GCA_002262935.1", "taxid": 2670334, "species_taxid": 2670334, "relation_to_type": "type", "validated": true, "ani": 76.8703, "matched_fragments": 91, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia filamentosa", "strain": "strain=DSM 27955", "accession": "GCA_002237735.1", "taxid": 1402861, "species_taxid": 1402861, "relation_to_type": "type", "validated": true, "ani": 76.7003, "matched_fragments": 139, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lederbergia wuyishanensis", "strain": "strain=CGMCC 1.12709", "accession": "GCA_022900255.1", "taxid": 1347903, "species_taxid": 1347903, "relation_to_type": "type", "validated": true, "ani": 76.3594, "matched_fragments": 66, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000746925.1", "gtdb_species": "s__Bacillus_A clarus", "ani": 100.0, "matched_fragments": 1949, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001884235.1", "gtdb_species": "s__Bacillus_A paramycoides", "ani": 87.3221, "matched_fragments": 1368, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "97.18", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_002975175.1", "gtdb_species": "s__Bacillus_A sp002975175", "ani": 87.272, "matched_fragments": 1429, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000832605.1", "gtdb_species": "s__Bacillus_A mycoides", "ani": 87.1274, "matched_fragments": 1412, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 125, "status": "-" }, { "accession": "GCF_000291355.1", "gtdb_species": "s__Bacillus_A cereus_O", "ani": 87.1248, "matched_fragments": 1311, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.56", "min_intra_species_ani": "96.56", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_018966865.1", "gtdb_species": "s__Bacillus_A sp018966865", "ani": 87.114, "matched_fragments": 1362, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.14", "min_intra_species_ani": "96.14", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001757995.1", "gtdb_species": "s__Bacillus_A mycoides_B", "ani": 87.0919, "matched_fragments": 1398, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_018742245.1", "gtdb_species": "s__Bacillus_A cereus_U", "ani": 87.0762, "matched_fragments": 1355, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_015071065.1", "gtdb_species": "s__Bacillus_A cereus_BA", "ani": 86.9807, "matched_fragments": 1383, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001884135.1", "gtdb_species": "s__Bacillus_A nitratireducens", "ani": 86.8677, "matched_fragments": 1351, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "95.62", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 78, "status": "-" }, { "accession": "GCF_007673305.1", "gtdb_species": "s__Bacillus_A mycoides_C", "ani": 86.8608, "matched_fragments": 1304, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.83", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001884065.1", "gtdb_species": "s__Bacillus_A proteolyticus", "ani": 86.7155, "matched_fragments": 1401, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.1182, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002574955.1", "gtdb_species": "s__Bacillus_A cereus_AT", "ani": 86.6295, "matched_fragments": 1356, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.1182, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "96.80", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.81", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000496285.1", "gtdb_species": "s__Bacillus_A toyonensis", "ani": 86.555, "matched_fragments": 1303, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "96.74", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 279, "status": "-" }, { "accession": "GCF_002564555.1", "gtdb_species": "s__Bacillus_A cereus_K", "ani": 86.4202, "matched_fragments": 1242, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "97.26", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001583695.1", "gtdb_species": "s__Bacillus_A wiedmannii", "ani": 86.1491, "matched_fragments": 1286, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 225, "status": "-" }, { "accession": "GCF_900094905.1", "gtdb_species": "s__Bacillus_A cereus_AG", "ani": 86.0159, "matched_fragments": 1272, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001884045.1", "gtdb_species": "s__Bacillus_A mobilis", "ani": 86.0059, "matched_fragments": 1250, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 33, "status": "-" }, { "accession": "GCF_008923725.1", "gtdb_species": "s__Bacillus_A sp008923725", "ani": 85.9774, "matched_fragments": 1296, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001883995.1", "gtdb_species": "s__Bacillus_A paranthracis", "ani": 85.9701, "matched_fragments": 1266, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.3658, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "95.70", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 231, "status": "-" }, { "accession": "GCF_001884035.1", "gtdb_species": "s__Bacillus_A tropicus", "ani": 85.9669, "matched_fragments": 1279, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.3658, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 109, "status": "-" }, { "accession": "GCF_001884185.1", "gtdb_species": "s__Bacillus_A albus", "ani": 85.824, "matched_fragments": 1338, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "95.46", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_002551815.1", "gtdb_species": "s__Bacillus_A sp002551815", "ani": 85.1194, "matched_fragments": 1108, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.69", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001590835.1", "gtdb_species": "s__Bacillus_A gaemokensis", "ani": 84.9536, "matched_fragments": 1308, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000161455.1", "gtdb_species": "s__Bacillus_A pseudomycoides", "ani": 84.8864, "matched_fragments": 1284, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 116, "status": "-" }, { "accession": "GCF_002559665.1", "gtdb_species": "s__Bacillus_A cereus_AV", "ani": 84.7367, "matched_fragments": 1226, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000299035.1", "gtdb_species": "s__Bacillus_A bingmayongensis", "ani": 84.6874, "matched_fragments": 1235, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "97.40", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.176, "cell_length": 0.387, "doubling_h": -0.134, "growth_tmp": 31.412, "optimum_tmp": 33.64, "optimum_ph": 7.746, "genome_size": 4544138.117, "gc_content": 40.577, "coding_genes": 4334.002, "rRNA16S_genes": 9.859, "tRNA_genes": 88.223, "gram_stain": 0.993, "sporulation": 0.975, "motility": 0.841, "range_salinity": 0.6, "facultative_respiration": 0.16, "anaerobic_respiration": 0.011, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 0.928, "thermophilic_range_tmp": 0.053, "psychrophilic_range_tmp": 0.017, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bacillus", "clarus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }