{ "type": "genome", "identifier": "GCF_000751755.1", "organism": "Klebsiella quasipneumoniae subsp. quasipneumoniae", "title": "Klebsiella quasipneumoniae subsp. quasipneumoniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000751755.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2471851", "wgs_master": "CCDF00000000.1", "refseq_category": "na", "taxid": "1667327", "species_taxid": "1463165", "organism_name": "Klebsiella quasipneumoniae subsp. quasipneumoniae", "infraspecific_name": "strain=01A030", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/05/16", "asm_name": "KQQSB11_PRJEB6037", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_000751755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/751/755/GCF_000751755.1_KQQSB11_PRJEB6037", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5465736", "genome_size_ungapped": "5465736", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "65", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000751755.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "5299", "protein_coding_gene_count": "5097", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-05-16", "dateModified": "2014-05-16", "datePublished": "2014-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Klebsiella quasipneumoniae subsp. quasipneumoniae" ], "sample_taxid": [ "1667327" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Disease" ], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "1.542 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5465736", "Number of Sequences": "65", "Longest Sequences (bp)": "504820", "N50 (bp)": "151149", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.0", "Number of CDSs": "5115", "Average Protein Length": "313.4", "Coding Ratio (%)": "88.0", "Number of rRNAs": "7", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klebsiella quasipneumoniae subsp. quasipneumoniae", "strain": "strain=01A030", 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"min_intra_species_af": "0.85", "num_clustered_genomes": 19, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.073, "cell_length": 0.161, "doubling_h": 0.072, "growth_tmp": 34.0, "optimum_tmp": 33.514, "optimum_ph": 7.0, "genome_size": 5424942.448, "gc_content": 57.677, "coding_genes": 5276.833, "rRNA16S_genes": 8.0, "tRNA_genes": 84.364, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.25, "range_salinity": 0.0, "facultative_respiration": 0.2, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.8, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Klebsiella", "quasipneumoniae", "subsp.", "quasipneumoniae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }