{ "type": "genome", "identifier": "GCF_000753795.1", "organism": "Shewanella mangrovi", "title": "Shewanella mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "85303", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000753795.1", "bioproject": "PRJNA224116", "biosample": "SAMN02887322", "wgs_master": "JPEO00000000.1", "refseq_category": "reference genome", "taxid": "1515746", "species_taxid": "1515746", "organism_name": "Shewanella mangrovi", "infraspecific_name": "strain=YQH10", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/10", "asm_name": "ASM75379v1", "asm_submitter": "85303", "gbrs_paired_asm": "GCA_000753795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/753/795/GCF_000753795.1_ASM75379v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4215794", "genome_size_ungapped": "4215794", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000753795.1-RS_2024_05_27", "annotation_date": "2024-05-27", "total_gene_count": "3801", "protein_coding_gene_count": "3693", "non_coding_gene_count": "97", "pubmed_id": "25957050" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-10", "dateModified": "2014-09-10", "datePublished": "2014-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella mangrovi" ], "sample_taxid": [ "1515746" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Zhangzhou" ], "sample_host_location_id": [], "data_size": "1.204 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4215794", "Number of Sequences": "49", "Longest Sequences (bp)": "614401", "N50 (bp)": "233342", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.1", "Number of CDSs": "3696", "Average Protein Length": "334.9", "Coding Ratio (%)": "88.1", "Number of rRNAs": "4", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella mangrovi", "strain": "strain=YQH10", "accession": "GCA_000753795.1", "taxid": 1515746, "species_taxid": 1515746, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1384, "total_fragments": 1386, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella avicenniae", "strain": "strain=FJAT-51800", "accession": "GCA_017354945.1", "taxid": 2814294, "species_taxid": 2814294, "relation_to_type": "type", "validated": true, "ani": 82.6712, "matched_fragments": 910, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella yunxiaonensis", "strain": "strain=FJAT-54481", "accession": "GCA_018223345.1", "taxid": 2829809, "species_taxid": 2829809, "relation_to_type": "type", "validated": true, "ani": 78.6284, "matched_fragments": 312, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella algae", "strain": "strain=CECT 5071", "accession": "GCA_009183365.2", "taxid": 38313, "species_taxid": 38313, "relation_to_type": "type", "validated": true, "ani": 78.3417, "matched_fragments": 221, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella indica", "strain": "strain=KJW27", 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"validated": true, "ani": 77.9189, "matched_fragments": 170, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella baltica", "strain": "strain=NCTC10735", "accession": "GCA_900456975.1", "taxid": 62322, "species_taxid": 62322, "relation_to_type": "type", "validated": true, "ani": 77.6215, "matched_fragments": 196, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 77.5846, "matched_fragments": 126, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella vesiculosa", "strain": "strain=M7", "accession": "GCA_021560015.1", "taxid": 518738, "species_taxid": 518738, "relation_to_type": "type", "validated": true, "ani": 77.5007, "matched_fragments": 116, 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"below_threshold" }, { "organism_name": "Vibrio stylophorae", "strain": "strain=CECT 7929", "accession": "GCA_921293875.1", "taxid": 659351, "species_taxid": 659351, "relation_to_type": "type", "validated": true, "ani": 76.5764, "matched_fragments": 53, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilimonas cestriensis", "strain": "strain=MKS20", "accession": "GCA_021295315.1", "taxid": 2742685, "species_taxid": 2742685, "relation_to_type": "type", "validated": true, "ani": 76.4497, "matched_fragments": 50, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas rhizosphaerae", "strain": "strain=RA15", "accession": "GCA_902498845.1", "taxid": 2518973, "species_taxid": 2518973, "relation_to_type": "type", "validated": true, "ani": 75.3784, "matched_fragments": 60, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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