{ "type": "genome", "identifier": "GCF_000754095.2", "organism": "Acidihalobacter prosperus", "title": "Acidihalobacter prosperus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fundacion Ciencia & Vida", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000754095.2", "bioproject": "PRJNA224116", "biosample": "SAMN02990926", "wgs_master": "JQSG00000000.2", "refseq_category": "reference genome", "taxid": "160660", "species_taxid": "160660", "organism_name": "Acidihalobacter prosperus", "infraspecific_name": "strain=DSM 5130", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/22", "asm_name": "ASM75409v2", "asm_submitter": "Fundacion Ciencia & Vida", "gbrs_paired_asm": "GCA_000754095.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/754/095/GCF_000754095.2_ASM75409v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3359675", "genome_size_ungapped": "3359675", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000754095.2-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3311", "protein_coding_gene_count": "3226", "non_coding_gene_count": "52", "pubmed_id": "25342676" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-22", "dateModified": "2016-06-22", "datePublished": "2016-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidihalobacter prosperus" ], "sample_taxid": [ "160660" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Porto di Levante (Vulcano Island)" ], "sample_host_location_id": [], "data_size": "0.930 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3359675", "Number of Sequences": "8", "Longest Sequences (bp)": "1111128", "N50 (bp)": "807228", "Gap Ratio (%)": "0.000060", "GCcontent (%)": "64.4", "Number of CDSs": "3259", "Average Protein Length": "312.8", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidihalobacter prosperus", "strain": "strain=DSM 5130", "accession": "GCA_000754095.2", "taxid": 160660, "species_taxid": 160660, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1111, 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"below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 77.8654, "matched_fragments": 209, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio denitrificans", "strain": "strain=ALJD", "accession": "GCA_002000365.1", "taxid": 108003, "species_taxid": 108003, "relation_to_type": "type", "validated": true, "ani": 77.6378, "matched_fragments": 158, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 77.1018, "matched_fragments": 190, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio thiocyanodenitrificans", "strain": "strain=ARhD 1", "accession": "GCA_000378965.1", "taxid": 243063, "species_taxid": 243063, "relation_to_type": "type", "validated": true, "ani": 77.0182, "matched_fragments": 164, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 76.9134, "matched_fragments": 135, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 76.9072, "matched_fragments": 163, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", 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