{
    "type": "genome",
    "identifier": "GCF_000754765.1",
    "organism": "Pectobacterium odoriferum",
    "title": "Pectobacterium odoriferum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Food and Environment Research Agency",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000754765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03010636",
        "wgs_master": "JQOG00000000.1",
        "refseq_category": "na",
        "taxid": "78398",
        "species_taxid": "78398",
        "organism_name": "Pectobacterium odoriferum",
        "infraspecific_name": "strain=NCPPB 3839",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/09/15",
        "asm_name": "ASM75476v1",
        "asm_submitter": "Food and Environment Research Agency",
        "gbrs_paired_asm": "GCA_000754765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/754/765/GCF_000754765.1_ASM75476v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5066211",
        "genome_size_ungapped": "5066211",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "156",
        "contig_count": "156",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-09-14",
        "total_gene_count": "4721",
        "protein_coding_gene_count": "4475",
        "non_coding_gene_count": "97",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-09-15",
    "dateModified": "2014-09-15",
    "datePublished": "2014-09-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pectobacterium odoriferum"
        ],
        "sample_taxid": [
            "78398"
        ],
        "sample_host_organism": [
            "Cichorium intybus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "1.444 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5066211",
        "Number of Sequences": "156",
        "Longest Sequences (bp)": "1127947",
        "N50 (bp)": "278770",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.6",
        "Number of CDSs": "4494",
        "Average Protein Length": "315.8",
        "Coding Ratio (%)": "84.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pectobacterium odoriferum",
                "strain": "strain=NCPPB 3839",
                "accession": "GCA_000754765.1",
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                "species_taxid": 78398,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1631,
                "total_fragments": 1635,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium carotovorum subsp. carotovorum",
                "strain": "strain=NCPPB 312",
                "accession": "GCA_000749855.1",
                "taxid": 555,
                "species_taxid": 554,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 95.224,
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                "total_fragments": 1635,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium carotovorum",
                "strain": "strain=DSM 30168",
                "accession": "GCA_900129615.1",
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                "species_taxid": 554,
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                "ani": 95.2225,
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                "total_fragments": 1635,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium carotovorum subsp. carotovorum",
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                "accession": "GCA_001039055.1",
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                "species_taxid": 554,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 95.2073,
                "matched_fragments": 1355,
                "total_fragments": 1635,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium versatile",
                "strain": "strain=CFBP6051",
                "accession": "GCA_004296685.1",
                "taxid": 2488639,
                "species_taxid": 2488639,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1304,
                "matched_fragments": 1325,
                "total_fragments": 1635,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium aquaticum",
                "strain": "strain=A212-S19-A16",
                "accession": "GCA_003382565.3",
                "taxid": 2204145,
                "species_taxid": 2204145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2699,
                "matched_fragments": 1194,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium actinidiae",
                "strain": "strain=KKH3",
                "accession": "GCA_000803315.1",
                "taxid": 1507808,
                "species_taxid": 1507808,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.9093,
                "matched_fragments": 1327,
                "total_fragments": 1635,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium parvum",
                "strain": "strain=s0421",
                "accession": "GCA_900195285.2",
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                "relation_to_type": "type",
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                "ani": 92.8779,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium polaris",
                "strain": "strain=NIBIO1006",
                "accession": "GCA_002307355.1",
                "taxid": 2042057,
                "species_taxid": 2042057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8442,
                "matched_fragments": 1316,
                "total_fragments": 1635,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium brasiliense",
                "strain": "strain=LMG 21371",
                "accession": "GCA_000754695.1",
                "taxid": 180957,
                "species_taxid": 180957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.3421,
                "matched_fragments": 1316,
                "total_fragments": 1635,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium brasiliense",
                "strain": "strain=IPO:3540 CFBP:6617 ATCC:BAA-417 IBSBF:1692",
                "accession": "GCA_016950255.1",
                "taxid": 180957,
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                "relation_to_type": "type",
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                "ani": 92.3091,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium quasiaquaticum",
                "strain": "strain=A477-S1-J17",
                "accession": "GCA_014946775.2",
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                "species_taxid": 2774015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.2413,
                "matched_fragments": 1210,
                "total_fragments": 1635,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium colocasium",
                "strain": "strain=LJ1",
                "accession": "GCA_020181655.1",
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                "species_taxid": 2878098,
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                "ani": 90.133,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
                "taxid": 2703793,
                "species_taxid": 2703793,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
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                "relation_to_type": "type",
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                "matched_fragments": 425,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella ecdela",
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                "accession": "GCA_019049625.1",
                "taxid": 2816250,
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                "relation_to_type": "type",
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                "matched_fragments": 412,
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                "accession": "GCF_900129615.1",
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}