{ "type": "genome", "identifier": "GCF_000756655.1", "organism": "Alcanivorax jadensis T9", "title": "Alcanivorax jadensis T9", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000756655.1", "bioproject": "PRJNA224116", "biosample": "SAMN03076214", "wgs_master": "ARXU00000000.1", "refseq_category": "reference genome", "taxid": "1177181", "species_taxid": "64988", "organism_name": "Alcanivorax jadensis T9", "infraspecific_name": "strain=T9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/23", "asm_name": "ASM75665v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_000756655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/756/655/GCF_000756655.1_ASM75665v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3629371", "genome_size_ungapped": "3629371", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000756655.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3336", "protein_coding_gene_count": "3272", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-23", "dateModified": "2014-09-23", "datePublished": "2014-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax jadensis T9" ], "sample_taxid": [ "1177181" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.026 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3629371", "Number of Sequences": "30", "Longest Sequences (bp)": "539039", "N50 (bp)": "244829", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.4", "Number of CDSs": "3319", "Average Protein Length": "319.4", "Coding Ratio (%)": "87.6", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1194, "total_fragments": 1195, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 81.4947, "matched_fragments": 714, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 80.9291, "matched_fragments": 668, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax nanhaiticus", "strain": "strain=19-m-6", "accession": "GCA_000756665.1", "taxid": 1177154, "species_taxid": 1177154, "relation_to_type": "type", "validated": true, "ani": 80.8428, "matched_fragments": 638, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax sediminis", "strain": "strain=PA15-N-34", "accession": "GCA_009601165.1", "taxid": 2663008, "species_taxid": 2663008, "relation_to_type": "type", "validated": true, "ani": 80.6988, "matched_fragments": 690, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax borkumensis", "strain": "strain=SK2", "accession": "GCA_000009365.1", "taxid": 59754, "species_taxid": 59754, "relation_to_type": "type", "validated": true, "ani": 80.1705, "matched_fragments": 541, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 79.4185, "matched_fragments": 489, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax venustensis", "strain": "strain=ISO4", "accession": "GCA_015356855.1", "taxid": 172371, "species_taxid": 172371, "relation_to_type": "type", "validated": true, "ani": 79.2527, "matched_fragments": 473, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 79.1754, "matched_fragments": 466, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 79.077, "matched_fragments": 407, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax limicola", "strain": "strain=JB21", "accession": "GCA_019931215.1", "taxid": 2874102, "species_taxid": 2874102, "relation_to_type": "type", "validated": true, "ani": 77.8001, "matched_fragments": 269, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 76.8774, "matched_fragments": 112, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 76.1684, "matched_fragments": 61, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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"gtdb_species": "s__Alcanivorax sp017794965", "ani": 81.3482, "matched_fragments": 727, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009882945.1", "gtdb_species": "s__Alcanivorax sp009882945", "ani": 81.3221, "matched_fragments": 727, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005938655.1", "gtdb_species": "s__Alcanivorax 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Alcanivorax", "jadensis", "T9" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }