{ "type": "genome", "identifier": "GCF_000756665.1", "organism": "Alcanivorax nanhaiticus", "title": "Alcanivorax nanhaiticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000756665.1", "bioproject": "PRJNA224116", "biosample": "SAMN03076215", "wgs_master": "ARXV00000000.1", "refseq_category": "reference genome", "taxid": "1177154", "species_taxid": "1177154", "organism_name": "Alcanivorax nanhaiticus", "infraspecific_name": "strain=19-m-6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/23", "asm_name": "ASM75666v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_000756665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/756/665/GCF_000756665.1_ASM75666v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4132804", "genome_size_ungapped": "4132804", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000756665.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3813", "protein_coding_gene_count": "3746", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-23", "dateModified": "2014-09-23", "datePublished": "2014-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax nanhaiticus" ], "sample_taxid": [ "1177154" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.174 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4132804", "Number of Sequences": "35", "Longest Sequences (bp)": "472158", "N50 (bp)": "276801", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.4", "Number of CDSs": "3816", "Average Protein Length": "316.3", "Coding Ratio (%)": "87.6", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax nanhaiticus", "strain": "strain=19-m-6", "accession": "GCA_000756665.1", "taxid": 1177154, "species_taxid": 1177154, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1359, "total_fragments": 1361, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alcanivorax sediminis", "strain": "strain=PA15-N-34", "accession": "GCA_009601165.1", "taxid": 2663008, "species_taxid": 2663008, "relation_to_type": "type", "validated": true, "ani": 83.7033, "matched_fragments": 905, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 82.246, "matched_fragments": 724, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 80.7455, "matched_fragments": 588, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 80.7304, "matched_fragments": 657, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax borkumensis", "strain": "strain=SK2", "accession": "GCA_000009365.1", "taxid": 59754, "species_taxid": 59754, "relation_to_type": "type", "validated": true, "ani": 79.3558, "matched_fragments": 452, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 78.9495, "matched_fragments": 333, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 78.7601, "matched_fragments": 310, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 77.98, "matched_fragments": 99, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax limicola", "strain": "strain=JB21", "accession": "GCA_019931215.1", "taxid": 2874102, "species_taxid": 2874102, "relation_to_type": "type", "validated": true, "ani": 77.8082, "matched_fragments": 237, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000756665.1", "gtdb_species": "s__Alcanivorax nanhaiticus", "ani": 100.0, "matched_fragments": 1359, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_017794965.1", "gtdb_species": "s__Alcanivorax sp017794965", "ani": 83.999, "matched_fragments": 928, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"status": "-" }, { "accession": "GCF_003597125.1", "gtdb_species": "s__Alcanivorax profundi", "ani": 82.2632, "matched_fragments": 722, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002706085.1", "gtdb_species": "s__Alcanivorax sp002706085", "ani": 82.1909, "matched_fragments": 688, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { 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