{
    "type": "genome",
    "identifier": "GCF_000756775.1",
    "organism": "Pseudomonas saudiphocaensis",
    "title": "Pseudomonas saudiphocaensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000756775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA2658259",
        "wgs_master": "CCSF00000000.1",
        "refseq_category": "na",
        "taxid": "1499686",
        "species_taxid": "1499686",
        "organism_name": "Pseudomonas saudiphocaensis",
        "infraspecific_name": "strain=20_BN",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/09/15",
        "asm_name": "PRJEB6478_assembly_1",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_000756775.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/756/775/GCF_000756775.1_PRJEB6478_assembly_1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3673759",
        "genome_size_ungapped": "3673759",
        "gc_percent": "61.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-12",
        "total_gene_count": "3455",
        "protein_coding_gene_count": "3350",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-09-15",
    "dateModified": "2014-09-15",
    "datePublished": "2014-09-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas saudiphocaensis"
        ],
        "sample_taxid": [
            "1499686"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.028 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3673759",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3673759",
        "N50 (bp)": "3673759",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.2",
        "Number of CDSs": "3395",
        "Average Protein Length": "321.7",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudomonas saudiphocaensis",
                "strain": "strain=20_BN",
                "accession": "GCA_000756775.2",
                "taxid": 1499686,
                "species_taxid": 1499686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1224,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas nitrititolerans",
                "strain": "strain=GL14",
                "accession": "GCA_003696285.1",
                "taxid": 2482751,
                "species_taxid": 2482751,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7,
                "matched_fragments": 901,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas frequens",
                "strain": "strain=FDAARGOS_877",
                "accession": "GCA_016028515.1",
                "taxid": 2968969,
                "species_taxid": 2968969,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.036,
                "matched_fragments": 801,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas frequens",
                "strain": "strain=DNSP21",
                "accession": "GCA_002890935.1",
                "taxid": 2968969,
                "species_taxid": 2968969,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9958,
                "matched_fragments": 803,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas frequens",
                "strain": "strain=DNSP21",
                "accession": "GCA_024448335.1",
                "taxid": 2968969,
                "species_taxid": 2968969,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9943,
                "matched_fragments": 785,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas songnenensis",
                "strain": "strain=DSM 27560T",
                "accession": "GCA_024448495.1",
                "taxid": 1176259,
                "species_taxid": 1176259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9702,
                "matched_fragments": 788,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas songnenensis",
                "strain": "strain=NEAU-ST5-5",
                "accession": "GCA_003696315.1",
                "taxid": 1176259,
                "species_taxid": 1176259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9084,
                "matched_fragments": 786,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=FDAARGOS_876",
                "accession": "GCA_016028635.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.8772,
                "matched_fragments": 793,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=DSM 50238",
                "accession": "GCA_002891015.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8705,
                "matched_fragments": 771,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas stutzeri",
                "strain": "strain=CGMCC 1.1803",
                "accession": "GCA_000219605.1",
                "taxid": 316,
                "species_taxid": 316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8456,
                "matched_fragments": 812,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas stutzeri",
                "strain": "strain=FDAARGOS_875",
                "accession": "GCA_016028655.1",
                "taxid": 316,
                "species_taxid": 316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8207,
                "matched_fragments": 818,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas kunmingensis",
                "strain": "strain=DSM 25974",
                "accession": "GCA_024397575.1",
                "taxid": 1211807,
                "species_taxid": 1211807,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8025,
                "matched_fragments": 776,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=DSM 50238",
                "accession": "GCA_024448505.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7927,
                "matched_fragments": 782,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas xanthomarina",
                "strain": "strain=DSM 18231",
                "accession": "GCA_024328335.1",
                "taxid": 271420,
                "species_taxid": 271420,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.701,
                "matched_fragments": 722,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas xanthomarina",
                "strain": "strain=DSM 18231",
                "accession": "GCA_900129835.1",
                "taxid": 271420,
                "species_taxid": 271420,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.6726,
                "matched_fragments": 728,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Pseudomonas] zhaodongensis",
                "strain": "strain=DSM 27559T",
                "accession": "GCA_024448735.1",
                "taxid": 1176257,
                "species_taxid": 1176257,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.3132,
                "matched_fragments": 703,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azotobacter beijerinckii",
                "strain": "strain=DSM 378",
                "accession": "GCA_900110885.1",
                "taxid": 170623,
                "species_taxid": 170623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8329,
                "matched_fragments": 509,
                "total_fragments": 1224,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000756775.1",
                "gtdb_species": "s__Pseudomonas_A saudiphocaensis",
                "ani": 100.0,
                "matched_fragments": 1224,
                "total_fragments": 1224,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002345575.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_S",
                "ani": 88.2369,
                "matched_fragments": 1047,
                "total_fragments": 1224,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013522825.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_AK",
                "ani": 85.9759,
                "matched_fragments": 968,
                "total_fragments": 1224,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002331645.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_T",
                "ani": 84.8343,
                "matched_fragments": 909,
                "total_fragments": 1224,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003696285.1",
                "gtdb_species": "s__Pseudomonas_A nitrititolerans",
                "ani": 83.7118,
                "matched_fragments": 899,
                "total_fragments": 1224,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.45",
                "min_intra_species_ani": "96.83",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 53,
                "status": "-"
            },
            {
                "accession": "GCF_002890915.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_AF",
                "ani": 82.675,
                "matched_fragments": 809,
                "total_fragments": 1224,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_015070855.1",
                "gtdb_species": "s__Pseudomonas_A lopnurensis",
                "ani": 82.4521,
                "matched_fragments": 793,
                "total_fragments": 1224,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.41",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_004331835.1",
                "gtdb_species": "s__Pseudomonas_A sp004331835",
                "ani": 81.9312,
                "matched_fragments": 828,
                "total_fragments": 1224,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.93",
                "min_intra_species_ani": "97.83",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_018138085.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_AI",
                "ani": 81.4811,
                "matched_fragments": 832,
                "total_fragments": 1224,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.15",
                "min_intra_species_ani": "96.92",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.248,
        "cell_length": 0.186,
        "doubling_h": -0.025,
        "growth_tmp": 28.767,
        "optimum_tmp": 27.972,
        "optimum_ph": 7.258,
        "genome_size": 3673760.0,
        "gc_content": 60.938,
        "coding_genes": 5204.79,
        "rRNA16S_genes": 5.319,
        "tRNA_genes": 67.35,
        "gram_stain": 0.0,
        "sporulation": 0.013,
        "motility": 0.975,
        "range_salinity": 0.666,
        "facultative_respiration": 0.021,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.978,
        "mesophilic_range_tmp": 0.926,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.073,
        "bacillus_cell_shape": 0.988,
        "coccus_cell_shape": 0.011,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pseudomonas",
        "saudiphocaensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}