{ "type": "genome", "identifier": "GCF_000756815.1", "organism": "Legionella massiliensis", "title": "Legionella massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000756815.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2747211", "wgs_master": "CCVW00000000.1", "refseq_category": "reference genome", "taxid": "1034943", "species_taxid": "1034943", "organism_name": "Legionella massiliensis", "infraspecific_name": "strain=LegA", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/09", "asm_name": "PRJEB6598_assembly_1", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_000756815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/756/815/GCF_000756815.1_PRJEB6598_assembly_1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4387007", "genome_size_ungapped": "4387007", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000756815.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3728", "protein_coding_gene_count": "3617", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-09", "dateModified": "2014-09-09", "datePublished": "2014-09-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella massiliensis" ], "sample_taxid": [ "1034943" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.244 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4387007", "Number of Sequences": "8", "Longest Sequences (bp)": "1713511", "N50 (bp)": "1031853", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.2", "Number of CDSs": "3711", "Average Protein Length": "338.2", "Coding Ratio (%)": "85.8", "Number of rRNAs": "7", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella massiliensis", "strain": "strain=LegA", "accession": "GCA_000756815.1", "taxid": 1034943, "species_taxid": 1034943, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1458, "total_fragments": 1459, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella nautarum", "strain": "strain=ATCC 49506", "accession": "GCA_001467895.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 78.6463, "matched_fragments": 235, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nautarum", "strain": "strain=1224", "accession": "GCA_900639935.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 78.5778, "matched_fragments": 232, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella brunensis", "strain": "strain=ATCC 43878", "accession": "GCA_001467025.1", "taxid": 29422, "species_taxid": 29422, "relation_to_type": "type", "validated": true, "ani": 78.4512, "matched_fragments": 179, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella hackeliae", "strain": "strain=ATCC35250", "accession": "GCA_000953655.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 78.2794, "matched_fragments": 139, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella feeleii", "strain": "strain=NCTC12022", "accession": "GCA_900452475.1", "taxid": 453, "species_taxid": 453, "relation_to_type": "type", "validated": true, "ani": 78.2693, "matched_fragments": 164, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella hackeliae", "strain": "strain=NCTC11979", "accession": "GCA_900452565.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 78.2489, "matched_fragments": 142, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella drozanskii", "strain": "strain=ATCC 700990", "accession": "GCA_001467585.1", "taxid": 96228, "species_taxid": 96228, "relation_to_type": "type", "validated": true, "ani": 78.1474, "matched_fragments": 216, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella drozanskii", "strain": "strain=LLAP-1", "accession": "GCA_900640075.1", "taxid": 96228, "species_taxid": 96228, "relation_to_type": "type", "validated": true, "ani": 78.0935, "matched_fragments": 208, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella clemsonensis", "strain": "strain=CDC-D5610", "accession": "GCA_002240035.1", "taxid": 1867846, "species_taxid": 1867846, "relation_to_type": "type", "validated": true, "ani": 78.0485, "matched_fragments": 141, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fairfieldensis", "strain": "strain=ATCC 49588", "accession": "GCA_000621525.1", "taxid": 45064, "species_taxid": 45064, "relation_to_type": "type", "validated": true, "ani": 77.9698, "matched_fragments": 139, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=FDAARGOS_200", "accession": "GCA_002082905.2", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 77.8949, "matched_fragments": 110, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fairfieldensis", "strain": "strain=1725-Aus-E", "accession": "GCA_900640125.1", "taxid": 45064, "species_taxid": 45064, "relation_to_type": "type", "validated": true, "ani": 77.8858, "matched_fragments": 140, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella tunisiensis", "strain": "strain=LegM", "accession": "GCA_000308315.1", "taxid": 1034944, "species_taxid": 1034944, "relation_to_type": "type", "validated": true, "ani": 77.8833, "matched_fragments": 153, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=FDAARGOS_1480", "accession": "GCA_019930885.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 77.8084, "matched_fragments": 106, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=WA-316-C3", "accession": "GCA_001467525.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 77.6742, "matched_fragments": 107, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=WA-316-C3", "accession": "GCA_900639785.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 77.6457, "matched_fragments": 108, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000756815.1", "gtdb_species": "s__Tatlockia massiliensis", "ani": 100.0, "matched_fragments": 1457, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001467895.1", "gtdb_species": "s__Tatlockia nautarum", "ani": 78.6386, "matched_fragments": 236, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000953655.1", "gtdb_species": "s__Tatlockia hackeliae", "ani": 78.2839, "matched_fragments": 140, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001467585.1", "gtdb_species": "s__Tatlockia drozanskii", "ani": 78.1474, "matched_fragments": 216, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" 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