{ "type": "genome", "identifier": "GCF_000757425.2", "organism": "Tatumella morbirosei", "title": "Tatumella morbirosei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Pretoria", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000757425.2", "bioproject": "PRJNA224116", "biosample": "SAMN02905535", "wgs_master": "JPKR00000000.2", "refseq_category": "reference genome", "taxid": "642227", "species_taxid": "642227", "organism_name": "Tatumella morbirosei", "infraspecific_name": "strain=LMG 23360", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/05/11", "asm_name": "Tmorbiroseiassem5", "asm_submitter": "University of Pretoria", "gbrs_paired_asm": "GCA_000757425.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/757/425/GCF_000757425.2_Tmorbiroseiassem5", "excluded_from_refseq": 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"Philippines" ], "sample_host_location_id": [], "data_size": "1.254 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4413398", "Number of Sequences": "6", "Longest Sequences (bp)": "1859919", "N50 (bp)": "1050954", "Gap Ratio (%)": "0.000045", "GCcontent (%)": "50.0", "Number of CDSs": "4065", "Average Protein Length": "310.1", "Coding Ratio (%)": "85.7", "Number of rRNAs": "22", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tatumella morbirosei", "strain": "strain=LMG 23360", "accession": "GCA_000757425.2", "taxid": 642227, "species_taxid": 642227, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1468, "total_fragments": 1468, 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"matched_fragments": 219, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella contaminans", "strain": "strain=Lac-M11", "accession": "GCA_011065485.1", "taxid": 2703882, "species_taxid": 2703882, "relation_to_type": "type", "validated": true, "ani": 77.6358, "matched_fragments": 184, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000757425.2", "gtdb_species": "s__Tatumella morbirosei", "ani": 100.0, "matched_fragments": 1467, "total_fragments": 1468, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Tatumella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.37", "min_intra_species_ani": "95.37", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Tatumella", "morbirosei" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }