{ "type": "genome", "identifier": "GCF_000757795.1", "organism": "Methylobacterium oryzae CBMB20", "title": "Methylobacterium oryzae CBMB20", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KRIBB", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000757795.1", "bioproject": "PRJNA224116", "biosample": "SAMN03075686", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "693986", "species_taxid": "334852", "organism_name": "Methylobacterium oryzae CBMB20", "infraspecific_name": "strain=CBMB20", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/25", "asm_name": "ASM75779v1", "asm_submitter": "KRIBB", "gbrs_paired_asm": "GCA_000757795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/757/795/GCF_000757795.1_ASM75779v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6286629", "genome_size_ungapped": "6286629", "gc_percent": "70.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000757795.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5838", "protein_coding_gene_count": "5658", "non_coding_gene_count": "75", "pubmed_id": "25211235" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-25", "dateModified": "2014-09-25", "datePublished": "2014-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium oryzae CBMB20" ], "sample_taxid": [ "693986" ], "sample_host_organism": [ "rice" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ 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"status": "below_threshold" }, { "organism_name": "Methylobacterium tardum", "strain": "strain=DSM 19566", "accession": "GCA_023546765.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 88.0199, "matched_fragments": 1484, "total_fragments": 2095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tardum", "strain": "strain=NBRC 103632", "accession": "GCA_022179585.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 88.0121, "matched_fragments": 1454, "total_fragments": 2095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 87.249, "matched_fragments": 1422, "total_fragments": 2095, "ani_threshold": 95, "status": "below_threshold" }, { 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103445.1", "gtdb_species": "s__Methylobacterium phyllostachyos", "ani": 86.7591, "matched_fragments": 1392, "total_fragments": 2095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.384, "doubling_h": 0.623, "growth_tmp": 28.0, "optimum_tmp": 28.667, "optimum_ph": 6.8, "genome_size": 6286629.25, "gc_content": 69.785, "coding_genes": 5904.0, "rRNA16S_genes": 6.142, "tRNA_genes": 57.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, 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