{ "type": "genome", "identifier": "GCF_000759755.1", "organism": "Citrobacter werkmanii NBRC 105721", "title": "Citrobacter werkmanii NBRC 105721", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000759755.1", "bioproject": "PRJNA224116", "biosample": "SAMD00018685", "wgs_master": "BBMW00000000.1", "refseq_category": "na", "taxid": "1114921", "species_taxid": "67827", "organism_name": "Citrobacter werkmanii NBRC 105721", "infraspecific_name": "strain=NBRC 105721", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/25", "asm_name": "ASM75975v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000759755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/759/755/GCF_000759755.1_ASM75975v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4947997", "genome_size_ungapped": "4947997", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000759755.1-RS_2024_08_09", "annotation_date": "2024-08-09", "total_gene_count": "4755", "protein_coding_gene_count": "4609", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-25", "dateModified": "2014-09-25", "datePublished": "2014-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter werkmanii NBRC 105721" ], "sample_taxid": [ "1114921" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "1.409 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4947997", "Number of Sequences": "30", "Longest Sequences (bp)": "611824", "N50 (bp)": "427597", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.1", "Number of CDSs": "4599", "Average Protein Length": "317.7", "Coding Ratio (%)": "88.6", "Number of rRNAs": "2", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter europaeus", "strain": "strain=97/79", "accession": "GCA_900079995.3", "taxid": 1914243, "species_taxid": 1914243, "relation_to_type": "type", "validated": true, "ani": 91.4143, "matched_fragments": 1380, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter arsenatis", "strain": "strain=LY-1", "accession": "GCA_004353845.1", "taxid": 2546350, "species_taxid": 2546350, "relation_to_type": "type", "validated": true, "ani": 91.1025, "matched_fragments": 1453, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter braakii", "strain": "strain=FDAARGOS 1421", "accession": "GCA_019048805.1", "taxid": 57706, "species_taxid": 57706, "relation_to_type": "type", "validated": true, "ani": 91.0401, "matched_fragments": 1374, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter portucalensis", "strain": "strain=A60", "accession": "GCA_002042885.1", "taxid": 1639133, "species_taxid": 1639133, "relation_to_type": "type", "validated": true, "ani": 90.9955, "matched_fragments": 1344, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter braakii", "strain": "strain=ATCC 51113", "accession": "GCA_002075345.1", "taxid": 57706, "species_taxid": 57706, "relation_to_type": "type", "validated": true, "ani": 90.9889, "matched_fragments": 1367, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_011064845.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 90.8786, "matched_fragments": 1375, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=NBRC 12681", "accession": "GCA_000759735.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 90.8774, "matched_fragments": 1361, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=MTCC 1658", "accession": "GCA_000312465.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 90.8548, "matched_fragments": 1377, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_000734905.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 90.8401, "matched_fragments": 1325, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter youngae", "strain": "strain=CCUG 30791", "accession": "GCA_003818115.1", "taxid": 133448, "species_taxid": 133448, "relation_to_type": "type", "validated": true, "ani": 89.2199, "matched_fragments": 1289, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter youngae", "strain": "strain=NCTC13709", "accession": "GCA_900638065.1", "taxid": 133448, "species_taxid": 133448, "relation_to_type": "type", "validated": true, "ani": 89.2027, "matched_fragments": 1303, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter pasteurii", "strain": "strain=FDAARGOS 1424", "accession": "GCA_019047765.1", "taxid": 1563222, "species_taxid": 1563222, "relation_to_type": "type", "validated": true, "ani": 88.9829, "matched_fragments": 1287, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter pasteurii", "strain": "strain=CIP 55.13", "accession": "GCA_000826205.1", "taxid": 1563222, "species_taxid": 1563222, "relation_to_type": "type", "validated": true, "ani": 88.9699, "matched_fragments": 1285, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": 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"GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.5651, "matched_fragments": 838, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.5152, "matched_fragments": 867, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000759755.1", "gtdb_species": "s__Citrobacter werkmanii", "ani": 100.0, "matched_fragments": 1633, "total_fragments": 1636, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": 0.0, "doubling_h": null, "growth_tmp": 32.0, "optimum_tmp": 34.75, "optimum_ph": null, "genome_size": 5013154.8, "gc_content": 52.138, "coding_genes": 4675.0, "rRNA16S_genes": 8.0, "tRNA_genes": 84.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Citrobacter", "werkmanii", "NBRC", "105721" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }