{ "type": "genome", "identifier": "GCF_000759815.1", "organism": "Citrobacter rodentium NBRC 105723 = DSM 16636", "title": "Citrobacter rodentium NBRC 105723 = DSM 16636", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000759815.1", "bioproject": "PRJNA224116", "biosample": "SAMD00019864", "wgs_master": "BBNA00000000.1", "refseq_category": "na", "taxid": "1218085", "species_taxid": "67825", "organism_name": "Citrobacter rodentium NBRC 105723 = DSM 16636", "infraspecific_name": "strain=NBRC 105723", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/26", "asm_name": "ASM75981v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000759815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/759/815/GCF_000759815.1_ASM75981v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5186777", "genome_size_ungapped": "5186777", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "139", "contig_count": "139", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000759815.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "5022", "protein_coding_gene_count": "4698", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-26", "dateModified": "2014-09-26", "datePublished": "2014-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter rodentium NBRC 105723 = DSM 16636" ], "sample_taxid": [ "1218085" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Connecticut" ], "sample_host_location_id": [], "data_size": "1.473 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5186777", "Number of Sequences": "139", "Longest Sequences (bp)": "272018", "N50 (bp)": "87629", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.6", "Number of CDSs": "4829", "Average Protein Length": "307.3", "Coding Ratio (%)": "85.8", "Number of rRNAs": "5", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter rodentium", "strain": "strain=NBRC 105723", "accession": "GCA_000759815.1", "taxid": 67825, "species_taxid": 67825, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1859, "matched_fragments": 884, "total_fragments": 1659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 82.1673, "matched_fragments": 897, "total_fragments": 1659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 82.0893, "matched_fragments": 889, "total_fragments": 1659, "ani_threshold": 95, "status": 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