{ "type": "genome", "identifier": "GCF_000759835.1", "organism": "Citrobacter sedlakii NBRC 105722", "title": "Citrobacter sedlakii NBRC 105722", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000759835.1", "bioproject": "PRJNA224116", "biosample": "SAMD00019865", "wgs_master": "BBNB00000000.1", "refseq_category": "na", "taxid": "1218086", "species_taxid": "67826", "organism_name": "Citrobacter sedlakii NBRC 105722", "infraspecific_name": "strain=NBRC 105722", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/26", "asm_name": "ASM75983v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000759835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/759/835/GCF_000759835.1_ASM75983v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4631466", "genome_size_ungapped": "4631466", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-08-06", "total_gene_count": "4404", "protein_coding_gene_count": "4253", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-26", "dateModified": "2014-09-26", "datePublished": "2014-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter sedlakii NBRC 105722" ], "sample_taxid": [ "1218086" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.312 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4631466", "Number of Sequences": "30", "Longest Sequences (bp)": "899269", "N50 (bp)": "290667", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.7", "Number of CDSs": "4263", "Average Protein Length": "320.7", "Coding Ratio (%)": "88.6", "Number of rRNAs": "5", "Number of tRNAs": "76", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter rodentium", "strain": "strain=ATCC 51116", "accession": "GCA_015965415.1", "taxid": 67825, 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"validated": true, "ani": 87.0063, "matched_fragments": 1212, "total_fragments": 1529, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=FDAARGOS_1489", "accession": "GCA_020099335.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": "type", "validated": true, "ani": 84.95, "matched_fragments": 1192, "total_fragments": 1529, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter arsenatis", "strain": "strain=LY-1", "accession": "GCA_004353845.1", "taxid": 2546350, "species_taxid": 2546350, "relation_to_type": "type", "validated": true, "ani": 82.8731, "matched_fragments": 1076, "total_fragments": 1529, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 82.1396, 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"total_fragments": 1529, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.9578, "matched_fragments": 873, "total_fragments": 1529, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 81.5621, "matched_fragments": 880, "total_fragments": 1529, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000759835.1", "gtdb_species": "s__Citrobacter_A sedlakii", "ani": 100.0, "matched_fragments": 1525, "total_fragments": 1529, "gtdb_taxonomy": 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null, "genome_size": 4631466.0, "gc_content": 54.72, "coding_genes": 4844.44, "rRNA16S_genes": 7.464, "tRNA_genes": 84.484, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Citrobacter", "sedlakii", "NBRC", "105722" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }