{ "type": "genome", "identifier": "GCF_000761475.1", "organism": "Chromohalobacter israelensis", "title": "Chromohalobacter israelensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000761475.1", "bioproject": "PRJNA224116", "biosample": "SAMN03000030", "wgs_master": "JQNW00000000.1", "refseq_category": "na", "taxid": "141390", "species_taxid": "141390", "organism_name": "Chromohalobacter israelensis", "infraspecific_name": "strain=DSM 6768", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/01", "asm_name": "ASM76147v1", "asm_submitter": "The Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_000761475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/761/475/GCF_000761475.1_ASM76147v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3660991", "genome_size_ungapped": "3660991", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000761475.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "3449", "protein_coding_gene_count": "3343", "non_coding_gene_count": "71", "pubmed_id": "25481275" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-01", "dateModified": "2014-10-01", "datePublished": "2014-10-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Chromohalobacter israelensis" ], "sample_taxid": [ "141390" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "1.017 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3660991", "Number of Sequences": "28", "Longest Sequences (bp)": "1037689", "N50 (bp)": "367869", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "3393", "Average Protein Length": "320.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "61", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chromohalobacter salexigens", "strain": "strain=DSM 3043", "accession": "GCA_000055785.1", "taxid": 158080, "species_taxid": 158080, "relation_to_type": "type", "validated": true, "ani": 97.9777, "matched_fragments": 1031, "total_fragments": 1207, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chromohalobacter marismortui", "strain": "strain=DSM 6770", "accession": "GCA_004364315.1", "taxid": 42055, "species_taxid": 42055, "relation_to_type": "type", "validated": true, "ani": 86.7687, "matched_fragments": 921, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter moromii", "strain": "strain=TMW 2.2308", "accession": "GCA_023091865.1", "taxid": 2860329, "species_taxid": 2860329, "relation_to_type": "type", "validated": true, "ani": 85.9649, "matched_fragments": 899, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter canadensis", "strain": "strain=DSM 6769", "accession": "GCA_023061155.1", "taxid": 141389, "species_taxid": 141389, "relation_to_type": "suspected-type", "validated": true, "ani": 85.6496, "matched_fragments": 895, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter beijerinckii", "strain": "strain=DSM 7218", "accession": "GCA_023061185.1", "taxid": 86179, "species_taxid": 86179, "relation_to_type": "type", "validated": true, "ani": 85.6474, "matched_fragments": 915, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter japonicus", "strain": "strain=CECT 7219", "accession": "GCA_023061175.1", "taxid": 223900, "species_taxid": 223900, "relation_to_type": "type", "validated": true, "ani": 85.5852, "matched_fragments": 894, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter sarecensis", "strain": "strain=DSM 15547", "accession": "GCA_023061135.1", "taxid": 245294, "species_taxid": 245294, "relation_to_type": "type", "validated": true, "ani": 83.9291, "matched_fragments": 883, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromohalobacter nigrandesensis", "strain": "strain=DSM 14323", "accession": "GCA_023061285.1", "taxid": 119863, "species_taxid": 119863, "relation_to_type": "type", "validated": true, "ani": 83.7881, "matched_fragments": 868, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 80.1701, "matched_fragments": 517, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 79.868, "matched_fragments": 465, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 79.8571, "matched_fragments": 486, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 79.611, "matched_fragments": 482, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 76.0321, "matched_fragments": 91, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 75.9752, "matched_fragments": 94, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas sediminis", "strain": "strain=YIM 72259", "accession": "GCA_007556605.1", "taxid": 2588941, "species_taxid": 2588941, "relation_to_type": "type", "validated": true, "ani": 75.9177, "matched_fragments": 104, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 75.3217, "matched_fragments": 69, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia aspalathi", 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