# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_21	LOCUS_00200	sequence1:17259..19919(+)	partial			WP_011674154.1	DUF5011 domain-containing protein	52.5	84.3	29.7
MGA_22	LOCUS_00210	sequence1:19969..21942(-)	partial			WP_010989363.1	LPXTG cell wall anchor domain-containing protein	23.9	22.1	25.1
MGA_106	LOCUS_01050	sequence1:118488..119030(+)	frameshift,internal_stop_codon	118431..118433(+)	119003	WP_009931192.1	type VII secretion protein EssB	96.1	43.5	82.1
MGA_107	LOCUS_01060	sequence1:119138..119566(+)	frameshift		119006	WP_009931192.1	type VII secretion protein EssB	100.0	35.7	86.6
MGA_113	LOCUS_01120	sequence1:125814..127664(+)	partial			WP_010989332.1	toxin	70.8	70.4	69.9
MGA_129	LOCUS_01280	sequence1:142832..145990(+)	partial			WP_011202044.1	hypothetical protein	73.0	83.3	25.5
MGA_143	LOCUS_01420	sequence1:158143..159543(+)	partial			WP_146623251.1	beta-glucoside-specific PTS transporter subunit IIABC	95.7	71.6	43.0
MGA_170	LOCUS_01690	sequence1:185767..186366(+)	frameshift		186363	WP_010989431.1	LXG domain-containing protein	100.0	40.5	77.4
MGA_180	LOCUS_01790	sequence1:197244..198023(+)	partial			WP_034349500.1	serine hydrolase	73.7	72.5	29.4
MGA_260	LOCUS_02570	sequence1:298517..299266(-)	frameshift		299328,298689	WP_002901594.1	glycyl-radical enzyme activating protein	80.7	80.6	49.5
MGA_263	LOCUS_02600	sequence1:301414..302922(+)	internal_stop_codon	301402..301404(+)		WP_002263031.1	glycyl radical protein	98.2	63.2	31.8
MGA_306	LOCUS_03030	sequence1:345927..346055(-)	frameshift		346137	WP_009930487.1	Cof-type HAD-IIB family hydrolase	100.0	15.4	85.7
MGA_307	LOCUS_03040	sequence1:346096..346701(-)	frameshift		346137	WP_009930487.1	Cof-type HAD-IIB family hydrolase	94.0	69.2	86.2
MGA_343	LOCUS_03400	sequence1:378952..380559(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	22.8	13.0	45.9
MGA_385	LOCUS_03820	sequence1:416365..416583(+)	frameshift		416611,416532,416699	WP_003723107.1	GNAT family N-acetyltransferase	80.6	41.1	63.8
MGA_387	LOCUS_03840	sequence1:418383..419630(+)	partial			WP_000527072.1	M4 family metallopeptidase	63.1	27.1	32.2
MGA_401	LOCUS_03980	sequence1:429955..430260(-)	partial			WP_010989454.1	cell envelope integrity protein TolA	58.4	20.3	81.4
MGA_410	LOCUS_04070	sequence1:437576..439123(+)	partial			WP_010989463.1	GW domain-containing class 2 internalin InlB	75.0	58.3	39.5
MGA_413	LOCUS_04100	sequence1:445586..449155(+)	partial			WP_010989452.1	class 1 internalin InlF	51.5	77.7	45.2
MGA_430	LOCUS_04270	sequence1:469160..469627(+)	frameshift		469612	WP_010989431.1	LXG domain-containing protein	97.4	30.8	86.1
MGA_431	LOCUS_04280	sequence1:469636..470580(+)	frameshift		469612	WP_010989431.1	LXG domain-containing protein	75.2	46.8	65.8
MGA_461	LOCUS_04580	sequence1:496215..496388(-)	partial			WP_003732113.1	hypothetical protein	98.2	70.9	57.1
MGA_485	LOCUS_04820	sequence1:517358..518602(+)	partial			WP_012256270.1	extracellular solute-binding protein	49.3	47.1	31.0
MGA_488	LOCUS_04850	sequence1:520426..522855(+)	partial			WP_008766599.1	glycoside hydrolase family 38 C-terminal domain-containing protein	96.4	63.9	24.7
MGA_583	LOCUS_05800	sequence1:623684..624046(+)	frameshift		624019	WP_003724062.1	GNAT family N-acetyltransferase	95.8	69.3	88.7
MGA_584	LOCUS_05810	sequence1:624048..624191(+)	frameshift		624019	WP_003724062.1	GNAT family N-acetyltransferase	100.0	28.3	89.4
MGA_599	LOCUS_05960	sequence1:636457..636963(+)	frameshift		636353,637002,636335	WP_003722812.1	glycerophosphodiester phosphodiesterase	92.3	26.6	78.1
MGA_602	LOCUS_05990	sequence1:639009..639272(+)	frameshift		639254	WP_003722815.1	hypothetical protein	97.7	56.3	88.2
MGA_603	LOCUS_06000	sequence1:639298..639465(+)	frameshift		639254	WP_003722815.1	hypothetical protein	100.0	36.4	96.4
MGA_623	LOCUS_06200	sequence1:662087..662245(+)	frameshift		662087	WP_010989344.1	F0F1 ATP synthase subunit delta	98.1	14.9	80.4
MGA_658	LOCUS_06550	sequence1:702327..702848(+)	partial			WP_010989987.1	hypothetical protein	61.8	59.6	40.0
MGA_723	LOCUS_07200	sequence1:760396..760605(-)	partial			WP_003721846.1	LPXTG cell wall anchor domain-containing protein	71.0	71.4	54.0
MGA_745	LOCUS_07420	sequence1:781382..782191(+)	internal_stop_codon	782189..782191(+)		WP_011087473.1	nucleoside hydrolase	97.8	83.4	39.0
MGA_746	LOCUS_07430	sequence1:782330..783136(+)	frameshift		783061	WP_010990070.1	PTS beta-glucoside transporter subunit IIBCA	95.5	38.8	49.4
MGA_747	LOCUS_07440	sequence1:783139..783747(+)	frameshift,internal_stop_codon	783746..783748(+),783815..783817(+)	783898,783067	WP_010990070.1	PTS beta-glucoside transporter subunit IIBCA	100.0	31.6	49.0
MGA_748	LOCUS_07450	sequence1:783914..784117(+)	frameshift		783897	WP_000473653.1	PTS glucose transporter subunit IIA	98.5	39.8	54.5
MGA_749	LOCUS_07460	sequence1:784117..784347(+)	frameshift		784341	WP_002356180.1	purine-nucleoside phosphorylase	98.7	27.6	54.7
MGA_750	LOCUS_07470	sequence1:784386..784628(+)	frameshift		784620,784341	WP_002356180.1	purine-nucleoside phosphorylase	93.8	27.6	61.3
MGA_751	LOCUS_07480	sequence1:784670..784933(+)	frameshift		784619	WP_002289198.1	purine-nucleoside phosphorylase	96.6	30.9	66.7
MGA_783	LOCUS_07800	sequence1:817982..819628(+)	partial			WP_011031530.1	hypothetical protein	46.0	30.4	25.3
MGA_802	LOCUS_07990	sequence1:837212..837700(-)	internal_stop_codon	837212..837214(-)		WP_002354705.1	MurR/RpiR family transcriptional regulator	93.2	53.0	32.5
MGA_803	LOCUS_08000	sequence1:837919..838644(+)	frameshift		838632	WP_003732901.1	hypothetical protein	99.2	71.6	41.1
MGA_804	LOCUS_08010	sequence1:838683..838892(+)	frameshift		838632	WP_003732901.1	hypothetical protein	100.0	22.3	53.6
MGA_821	LOCUS_08180	sequence1:854967..858143(-)	partial			WP_010989427.1	class 1 internalin InlI	85.4	49.3	33.5
MGA_823	LOCUS_08200	sequence1:859511..860527(+)	internal_stop_codon	859499..859501(+)		WP_003733311.1	SpaA isopeptide-forming pilin-related protein	92.0	51.3	37.0
MGA_839	LOCUS_08360	sequence1:883618..884319(+)	frameshift		884295	WP_010989455.1	Cof-type HAD-IIB family hydrolase	97.4	84.1	75.8
MGA_846	LOCUS_08430	sequence1:890379..892358(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	69.7	47.1	31.2
MGA_848	LOCUS_08450	sequence1:892884..894209(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	80.3	38.9	26.5
MGA_867	LOCUS_08640	sequence1:915175..918078(-)	internal_stop_codon	918166..918168(-)		WP_002209115.1	putative mucin/carbohydrate-binding domain-containing protein	70.2	80.3	32.5
MGA_868	LOCUS_08650	sequence1:918166..918642(-)	internal_stop_codon	918166..918168(-)		WP_078404002.1	putative mucin/carbohydrate-binding domain-containing protein	92.4	20.1	40.3
MGA_871	LOCUS_08680	sequence1:919804..920421(+)	partial			WP_010989600.1	amidohydrolase family protein	100.0	61.7	82.0
MGA_877	LOCUS_08740	sequence1:922998..923336(+)	partial			WP_010989601.1	MFS transporter	100.0	28.9	85.7
MGA_995	LOCUS_09920	sequence1:1032100..1032519(+)	frameshift		1032504	WP_010989634.1	ABC transporter permease	96.4	47.2	88.8
MGA_996	LOCUS_09930	sequence1:1032545..1032955(+)	frameshift		1032504	WP_010989634.1	ABC transporter permease	100.0	47.9	80.1
MGA_1010	LOCUS_10070	sequence1:1047494..1047712(-)	partial			WP_003722866.1	YkvS family protein	83.3	63.8	100.0
MGA_1059	LOCUS_10560	sequence1:1092245..1092433(+)	partial			WP_010989650.1	flavin reductase	88.7	29.9	83.6
MGA_1076	LOCUS_10730	sequence1:1110318..1112333(-)	partial			WP_010990014.1	autolysin Ami	40.7	31.2	46.9
MGA_1086	LOCUS_10830	sequence1:1125088..1127376(+)	partial			WP_003243594.1	beta-N-acetylglucosaminidase LytD	51.3	42.0	38.4
MGA_1090	LOCUS_10870	sequence1:1131448..1133799(+)	partial			WP_010989657.1	CDP-glycerol glycerophosphotransferase family protein	61.7	66.5	39.3
MGA_1093	LOCUS_10900	sequence1:1135737..1137110(+)	partial			WP_009968267.1	glycosyltransferase family 2 protein	70.7	71.7	42.6
MGA_1094	LOCUS_10910	sequence1:1137132..1138286(+)	partial			WP_003243463.1	teichoic acid poly(glycerol phosphate) polymerase	99.0	51.3	57.3
MGA_1102	LOCUS_10990	sequence1:1145530..1145823(-)	frameshift		1145370,1145547,1145574	WP_180269231.1	IS3 family transposase	95.9	24.7	35.1
MGA_1106	LOCUS_11030	sequence1:1148409..1148735(+)	internal_stop_codon	1148733..1148735(+)		WP_010989431.1	LXG domain-containing protein	91.7	20.2	56.6
MGA_1107	LOCUS_11040	sequence1:1149030..1149650(+)	partial			WP_010989360.1	hypothetical protein	44.7	44.9	48.9
MGA_1112	LOCUS_11090	sequence1:1152241..1152432(+)	internal_stop_codon	1152010..1152012(+)		WP_010989686.1	hypothetical protein	95.2	33.9	95.0
MGA_1115	LOCUS_11120	sequence1:1153230..1153457(+)	internal_stop_codon	1153455..1153457(+)		WP_010989685.1	hypothetical protein	98.7	53.2	66.2
MGA_1116	LOCUS_11130	sequence1:1153464..1153646(+)	internal_stop_codon	1153455..1153457(+)		WP_010989685.1	hypothetical protein	98.3	43.2	63.3
MGA_1133	LOCUS_11300	sequence1:1169375..1169647(+)	frameshift		1169382	WP_003723189.1	inorganic diphosphatase	95.6	69.9	62.8
MGA_1134	LOCUS_11310	sequence1:1170442..1171929(+)	partial			WP_015776044.1	glycoside hydrolase family 3 N-terminal domain-containing protein	92.5	66.5	30.9
MGA_1225	LOCUS_12220	sequence1:1243803..1243940(+)	partial			WP_109983297.1	IS200/IS605 family transposase	93.3	26.4	81.0
MGA_1227	LOCUS_12240	sequence1:1245611..1245805(+)	frameshift		1245593,1245627	WP_109983297.1	IS200/IS605 family transposase	87.5	35.2	75.0
MGA_1233	LOCUS_12300	sequence1:1251470..1251919(+)	frameshift		1251901	WP_003721621.1	ABC transporter ATP-binding protein	96.6	61.8	93.8
MGA_1234	LOCUS_12310	sequence1:1251891..1252169(+)	frameshift		1251901	WP_003721621.1	ABC transporter ATP-binding protein	98.9	39.1	85.7
MGA_1256	LOCUS_12530	sequence1:1280570..1283893(+)	partial			WP_010990014.1	autolysin Ami	57.2	70.0	53.7
MGA_1258	LOCUS_12550	sequence1:1285969..1286661(+)	partial			WP_010989812.1	class 3 internalin InlC	57.8	44.9	65.4
MGA_1259	LOCUS_12560	sequence1:1286999..1287961(+)	partial			WP_010989385.1	class 1 internalin InlG	79.7	56.5	37.4
MGA_1335	LOCUS_13320	sequence1:1361537..1362067(-)	frameshift		1362135	WP_009930695.1	class I SAM-dependent methyltransferase	99.4	72.0	71.4
MGA_1336	LOCUS_13330	sequence1:1362121..1362267(-)	frameshift		1362135	WP_009930695.1	class I SAM-dependent methyltransferase	97.9	19.3	87.2
MGA_1440	LOCUS_14370	sequence1:1468659..1468955(-)	frameshift		1469031	WP_012546237.1	site-specific tyrosine recombinase XerD	95.9	31.6	42.6
MGA_1441	LOCUS_14380	sequence1:1469029..1469535(-)	frameshift		1469031	WP_001015601.1	tyrosine recombinase XerC	98.2	57.0	24.9
MGA_1443	LOCUS_14400	sequence1:1470087..1470359(+)	frameshift		1470335	WP_003732480.1	Rgg/GadR/MutR family transcriptional regulator	93.3	27.8	36.9
MGA_1449	LOCUS_14460	sequence1:1473146..1477750(-)	frameshift		1477782	WP_010989464.1	LapB repeat-containing protein	99.9	75.8	64.5
MGA_1450	LOCUS_14470	sequence1:1477759..1479222(-)	frameshift		1477782	WP_010989464.1	LapB repeat-containing protein	98.2	23.2	50.9
MGA_1470	LOCUS_14670	sequence1:1500727..1501182(-)	internal_stop_codon	1500727..1500729(-)		WP_010990121.1	hypothetical protein	100.0	70.4	77.0
MGA_1513	LOCUS_15100	sequence1:1545289..1545516(-)	internal_stop_codon	1545280..1545282(-),1545289..1545291(-),1545541..1545543(-)		WP_010990135.1	aldehyde reductase	100.0	23.7	66.7
MGA_1514	LOCUS_15110	sequence1:1545541..1545774(-)	internal_stop_codon	1545280..1545282(-),1545289..1545291(-),1545541..1545543(-)		WP_010990135.1	aldehyde reductase	97.4	23.4	72.5
MGA_1587	LOCUS_15840	sequence1:1618038..1618295(-)	partial			WP_010989739.1	A24 family peptidase	100.0	36.0	68.2
MGA_1657	LOCUS_16540	sequence1:1699703..1700404(-)	frameshift		1700418	WP_003723579.1	MBL fold metallo-hydrolase	100.0	82.7	78.2
MGA_1658	LOCUS_16550	sequence1:1700401..1700550(-)	frameshift		1700418	WP_003723579.1	MBL fold metallo-hydrolase	89.8	15.5	88.6
MGA_1667	LOCUS_16640	sequence1:1706829..1708451(-)	internal_stop_codon	1708644..1708646(-)		WP_010989332.1	toxin	66.7	57.8	66.9
MGA_1706	LOCUS_17030	sequence1:1753484..1753624(-)	partial			WP_004399108.1	N-acetylmuramoyl-L-alanine amidase BlyA	93.5	11.7	81.4
MGA_1712	LOCUS_17090	sequence1:1756755..1757870(-)	partial			WP_011860984.1	DUF4041 domain-containing protein	100.0	66.8	41.2
MGA_1719	LOCUS_17160	sequence1:1764024..1764968(+)	partial			WP_015776036.1	GNAT family N-acetyltransferase	76.8	74.2	27.5
MGA_1863	LOCUS_18570	sequence1:1924143..1926152(-)	partial			WP_010989814.1	LPXTG cell wall anchor domain-containing protein	33.8	25.1	88.1
MGA_1936	LOCUS_19300	sequence1:1999544..2000905(-)	partial			WP_010965588.1	M4 family metallopeptidase	29.6	16.0	48.5
MGA_1963	LOCUS_19570	sequence1:2027378..2027911(-)	frameshift		2027925	WP_011028048.1	DNA alkylation repair protein	97.7	68.6	26.6
MGA_2032	LOCUS_20260	sequence1:2095977..2096249(-)	partial			WP_165992825.1	IS3 family transposase	91.1	21.5	46.3
MGA_2051	LOCUS_20450	sequence1:2117455..2117592(+)	partial			WP_003727979.1	hypothetical protein	71.1	71.1	96.9
MGA_2141	LOCUS_21350	sequence1:2212816..2214489(-)	internal_stop_codon	2212523..2212525(-),2212754..2212756(-)		WP_010989462.1	class 1 internalin InlA	83.7	57.0	40.0
MGA_2159	LOCUS_21530	sequence1:2228910..2230142(-)	frameshift		2230101	WP_010989891.1	SpaA isopeptide-forming pilin-related protein	96.1	69.6	65.4
MGA_2160	LOCUS_21540	sequence1:2230063..2230614(-)	frameshift		2230101	WP_010989891.1	SpaA isopeptide-forming pilin-related protein	92.9	30.1	68.8
MGA_2165	LOCUS_21590	sequence1:2235381..2235800(+)	frameshift		2235716	WP_000542320.1	Fic family protein	96.4	36.0	38.4
MGA_2166	LOCUS_21600	sequence1:2236040..2236564(+)	frameshift		2236546	WP_000542320.1	Fic family protein	94.8	38.9	41.7
MGA_2181	LOCUS_21750	sequence1:2250630..2252726(-)	partial			WP_010989452.1	class 1 internalin InlF	41.8	32.2	32.7
MGA_2205	LOCUS_21990	sequence1:2276099..2277388(-)	partial			WP_003243411.1	major teichoic acid biosynthesis protein C	59.4	58.6	27.5
MGA_2216	LOCUS_22100	sequence1:2291814..2292179(-)	frameshift		2292151	WP_003722255.1	Crp/Fnr family transcriptional regulator	79.3	41.9	87.5
MGA_2217	LOCUS_22110	sequence1:2292089..2292526(-)	frameshift		2292151	WP_003722255.1	Crp/Fnr family transcriptional regulator	84.1	53.3	82.0
MGA_2350	LOCUS_23440	sequence1:2435193..2435429(-)	partial			WP_003723667.1	IDEAL domain-containing protein	100.0	66.1	91.0
MGA_2413	LOCUS_24050	sequence1:2501988..2502299(-)	frameshift		2502307	WP_011140193.1	aldo/keto reductase	87.4	27.6	47.8
MGA_2414	LOCUS_24060	sequence1:2502296..2502949(-)	frameshift		2502331	WP_011975421.1	aldo/keto reductase	94.5	61.7	54.1
MGA_2429	LOCUS_24210	sequence1:2516916..2517128(-)	partial			WP_003723326.1	thioredoxin family protein	100.0	74.5	70.0
MGA_2445	LOCUS_24370	sequence1:2529242..2529424(-)	internal_stop_codon	2529434..2529436(-)		WP_009932617.1	effector binding domain-containing protein	93.3	44.1	66.1
MGA_2446	LOCUS_24380	sequence1:2529434..2529625(-)	internal_stop_codon	2529434..2529436(-)		WP_009932617.1	effector binding domain-containing protein	96.8	48.0	78.7
MGA_2449	LOCUS_24410	sequence1:2532333..2534630(-)	internal_stop_codon	2534640..2534642(-)		WP_010989993.1	glycoside hydrolase family 31 protein	99.5	58.1	89.5
MGA_2450	LOCUS_24420	sequence1:2534640..2536256(-)	internal_stop_codon	2534640..2534642(-)		WP_010989993.1	glycoside hydrolase family 31 protein	100.0	41.3	89.6
MGA_2474	LOCUS_24660	sequence1:2564519..2565370(-)	internal_stop_codon	2565638..2565640(-)		WP_010989999.1	polysaccharide monooxygenase	99.6	59.0	74.8
MGA_2475	LOCUS_24670	sequence1:2565638..2565955(-)	internal_stop_codon	2565638..2565640(-)		WP_010989999.1	polysaccharide monooxygenase	100.0	22.0	81.9
MGA_2544	LOCUS_25360	sequence1:2636242..2636730(-)	partial			WP_003732518.1	F0F1 ATP synthase subunit A	100.0	68.1	95.7
MGA_2606	LOCUS_25970	sequence1:2702633..2703901(-)	internal_stop_codon	2703932..2703934(-)		WP_011100911.1	discoidin domain-containing protein	96.0	43.5	26.3
MGA_2607	LOCUS_25980	sequence1:2703932..2704693(-)	internal_stop_codon	2703932..2703934(-)		WP_236023556.1	discoidin domain-containing protein	88.5	22.9	29.7
MGA_2674	LOCUS_26650	sequence1:2755804..2756526(+)	frameshift		2756406	WP_003722014.1	deoxyguanosinetriphosphate triphosphohydrolase	85.8	44.3	58.0
MGA_2675	LOCUS_26660	sequence1:2756433..2757191(+)	frameshift		2756406	WP_003722014.1	deoxyguanosinetriphosphate triphosphohydrolase	99.6	54.2	47.0
MGA_2678	LOCUS_26690	sequence1:2759283..2760746(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	75.4	39.4	26.4
MGA_2711	LOCUS_27020	sequence1:2796134..2797477(+)	partial			WP_010990043.1	1,4-beta-N-acetylmuramoylhydrolase	87.9	68.8	64.1
MGA_2725	LOCUS_27160	sequence1:2807524..2807796(-)	partial			WP_003722585.1	amino acid ABC transporter ATP-binding protein	93.3	39.4	36.3
MGA_2731	LOCUS_27220	sequence1:2812197..2814575(-)	partial			WP_000527072.1	M4 family metallopeptidase	36.5	33.0	35.1
MGA_2739	LOCUS_27300	sequence1:2822633..2823724(-)	partial			WP_071743885.1	nucleoside-diphosphate sugar epimerase/dehydratase	93.9	57.0	51.2
MGA_2743	LOCUS_27340	sequence1:2825676..2828753(-)	partial			WP_010989418.1	cell invasion LPXTG protein Vip	24.3	56.1	28.7
MGA_2744	LOCUS_27350	sequence1:2828882..2829430(-)	frameshift,internal_stop_codon	2829433..2829435(-)	2829447	WP_003722255.1	Crp/Fnr family transcriptional regulator	92.3	73.4	29.8
MGA_2761	LOCUS_27520	sequence1:2844733..2844936(-)	partial			WP_003727657.1	DUF3188 domain-containing protein	74.6	83.3	80.0
MGA_2820	LOCUS_28110	sequence1:2905752..2906267(+)	frameshift		2905600	WP_010989392.1	glycoside hydrolase family 1 protein	63.2	22.6	53.7
MGA_2821	LOCUS_28120	sequence1:2906303..2906659(+)	frameshift		2906264	WP_003548211.1	beta-glucoside-specific PTS transporter subunit IIABC	83.1	13.4	50.0
MGA_2834	LOCUS_28250	sequence1:2919025..>2919548(-)	partial			WP_010990071.1	helix-turn-helix transcriptional regulator	100.0	68.7	94.2
