{ "type": "genome", "identifier": "GCF_000764665.1", "organism": "Aeromonas lacus", "title": "Aeromonas lacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Auburn University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000764665.1", "bioproject": "PRJNA224116", "biosample": "SAMN03023876", "wgs_master": "JRGM00000000.1", "refseq_category": "reference genome", "taxid": "558884", "species_taxid": "558884", "organism_name": "Aeromonas lacus", "infraspecific_name": "strain=AE122", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/08", "asm_name": "ASM76466v1", "asm_submitter": "Auburn University", "gbrs_paired_asm": "GCA_000764665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/764/665/GCF_000764665.1_ASM76466v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4394373", "genome_size_ungapped": "4394373", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "196", "contig_count": "196", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000764665.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "4145", "protein_coding_gene_count": "4003", "non_coding_gene_count": "71", "pubmed_id": "25414500;25852023" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-08", "dateModified": "2014-10-08", "datePublished": "2014-10-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonas lacus" ], "sample_taxid": [ "558884" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.243 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4394373", "Number of Sequences": "196", "Longest Sequences (bp)": "194088", "N50 (bp)": "79727", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.0", "Number of CDSs": "3930", "Average Protein Length": "317.1", "Coding Ratio (%)": "85.1", "Number of rRNAs": "2", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas lacus", "strain": "strain=AE122", "accession": "GCA_000764665.1", "taxid": 558884, "species_taxid": 558884, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1374, "total_fragments": 1380, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Aeromonas jandaei", "strain": "strain=CECT 4228", "accession": "GCA_000819955.1", "taxid": 650, "species_taxid": 650, "relation_to_type": "type", "validated": true, "ani": 95.8323, "matched_fragments": 1286, "total_fragments": 1380, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Aeromonas jandaei", "strain": "strain=FDAARGOS_986", "accession": "GCA_016127195.1", "taxid": 650, "species_taxid": 650, "relation_to_type": "type", "validated": true, "ani": 95.8144, "matched_fragments": 1328, "total_fragments": 1380, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Aeromonas jandaei", "strain": "strain=FDAARGOS_1523", "accession": "GCA_020341535.1", "taxid": 650, "species_taxid": 650, "relation_to_type": "type", "validated": true, "ani": 95.7997, "matched_fragments": 1329, "total_fragments": 1380, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Aeromonas veronii", "strain": "strain=ATCC 35624", "accession": "GCA_018359905.1", 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