{
    "type": "genome",
    "identifier": "GCF_000765475.1",
    "organism": "Methanococcoides methylutens",
    "title": "Methanococcoides methylutens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "King Abdullah University of Science and Technology (KAUST)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000765475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03067868",
        "wgs_master": "JRHO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2226",
        "species_taxid": "2226",
        "organism_name": "Methanococcoides methylutens",
        "infraspecific_name": "strain=DSM 2657",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/10/10",
        "asm_name": "Mmet_Version1",
        "asm_submitter": "King Abdullah University of Science and Technology (KAUST)",
        "gbrs_paired_asm": "GCA_000765475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/765/475/GCF_000765475.1_Mmet_Version1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2508511",
        "genome_size_ungapped": "2508511",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "15",
        "contig_count": "15",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000765475.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "2533",
        "protein_coding_gene_count": "2441",
        "non_coding_gene_count": "61",
        "pubmed_id": "25414501"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-10-10",
    "dateModified": "2014-10-10",
    "datePublished": "2014-10-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanococcoides methylutens"
        ],
        "sample_taxid": [
            "2226"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: La Jolla, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.712 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2508511",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "1003006",
        "N50 (bp)": "532292",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.5",
        "Number of CDSs": "2462",
        "Average Protein Length": "289.4",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanococcoides methylutens",
                "strain": "strain=DSM 2657",
                "accession": "GCA_000765475.1",
                "taxid": 2226,
                "species_taxid": 2226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 829,
                "total_fragments": 829,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanococcoides methylutens",
                "strain": "",
                "accession": "GCA_900773915.1",
                "taxid": 2226,
                "species_taxid": 2226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9883,
                "matched_fragments": 820,
                "total_fragments": 829,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanococcoides orientis",
                "strain": "strain=LMO-1",
                "accession": "GCA_021184045.1",
                "taxid": 2822137,
                "species_taxid": 2822137,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.5926,
                "matched_fragments": 713,
                "total_fragments": 829,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanococcoides vulcani",
                "strain": "",
                "accession": "GCA_900773955.1",
                "taxid": 1353158,
                "species_taxid": 1353158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3603,
                "matched_fragments": 611,
                "total_fragments": 829,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanococcoides vulcani",
                "strain": "strain=SLH 33",
                "accession": "GCA_900111645.1",
                "taxid": 1353158,
                "species_taxid": 1353158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2744,
                "matched_fragments": 625,
                "total_fragments": 829,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000765475.1",
                "gtdb_species": "s__Methanococcoides methylutens",
                "ani": 100.0,
                "matched_fragments": 829,
                "total_fragments": 829,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900774055.1",
                "gtdb_species": "s__Methanococcoides sp900774055",
                "ani": 89.815,
                "matched_fragments": 671,
                "total_fragments": 829,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111645.1",
                "gtdb_species": "s__Methanococcoides vulcani",
                "ani": 89.265,
                "matched_fragments": 625,
                "total_fragments": 829,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "95.89",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000970325.1",
                "gtdb_species": "s__Methanococcoides methylutens_A",
                "ani": 84.1859,
                "matched_fragments": 617,
                "total_fragments": 829,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000013725.1",
                "gtdb_species": "s__Methanococcoides burtonii",
                "ani": 79.7794,
                "matched_fragments": 359,
                "total_fragments": 829,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.477,
        "doubling_h": 0.772,
        "growth_tmp": 31.4,
        "optimum_tmp": 32.5,
        "optimum_ph": 7.25,
        "genome_size": 2432595.0,
        "gc_content": 43.249,
        "coding_genes": 2232.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methanococcoides",
        "methylutens"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}