{ "type": "genome", "identifier": "GCF_000766145.1", "organism": "Listeria newyorkensis", "title": "Listeria newyorkensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cornell University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000766145.1", "bioproject": "PRJNA224116", "biosample": "SAMN02754401", "wgs_master": "JNFB00000000.1", "refseq_category": "na", "taxid": "1497681", "species_taxid": "1497681", "organism_name": "Listeria newyorkensis", "infraspecific_name": "strain=FSL M6-0635", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/10", "asm_name": "ASM76614v1", "asm_submitter": "Cornell University", "gbrs_paired_asm": "GCA_000766145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/766/145/GCF_000766145.1_ASM76614v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3515436", "genome_size_ungapped": "3515436", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000766145.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "3392", "protein_coding_gene_count": "3312", "non_coding_gene_count": "66", "pubmed_id": "25342111" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-10", "dateModified": "2014-10-10", "datePublished": "2014-10-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Listeria newyorkensis" ], "sample_taxid": [ "1497681" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: New York" ], "sample_host_location_id": [], "data_size": "1.000 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3515436", "Number of Sequences": "47", "Longest Sequences (bp)": "535768", "N50 (bp)": "168176", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.9", "Number of CDSs": "3336", "Average Protein Length": "307.2", "Coding Ratio (%)": "87.5", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Listeria newyorkensis", "strain": "strain=FSL M6-0635", "accession": "GCA_000766145.1", "taxid": 1497681, "species_taxid": 1497681, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1150, "total_fragments": 1152, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Listeria newyorkensis", "strain": "strain=NCTC13937", "accession": "GCA_900461625.1", "taxid": 1497681, "species_taxid": 1497681, "relation_to_type": "type", "validated": true, "ani": 99.984, "matched_fragments": 1108, "total_fragments": 1152, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Listeria cornellensis", "strain": "strain=FSL F6-0969", "accession": "GCA_000525855.1", "taxid": 1494961, "species_taxid": 1494961, "relation_to_type": "type", "validated": true, "ani": 90.9148, "matched_fragments": 878, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria rustica", "strain": "strain=FSL W9-0585", "accession": "GCA_013820765.1", "taxid": 2713503, "species_taxid": 2713503, "relation_to_type": "type", "validated": true, "ani": 89.6737, "matched_fragments": 887, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria 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0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Listeria", "newyorkensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }