{ "type": "genome", "identifier": "GCF_000767255.1", "organism": "Corynebacterium auriscanis", "title": "Corynebacterium auriscanis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UFMG Brazil", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000767255.1", "bioproject": "PRJNA224116", "biosample": "SAMN03106126", "wgs_master": "JRVJ00000000.1", "refseq_category": "na", "taxid": "99807", "species_taxid": "99807", "organism_name": "Corynebacterium auriscanis", "infraspecific_name": "strain=CIP 106629", "isolate": "Ear of dog", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/17", "asm_name": "ASM76725v1", "asm_submitter": "UFMG Brazil", "gbrs_paired_asm": "GCA_000767255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/767/255/GCF_000767255.1_ASM76725v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2568862", "genome_size_ungapped": "2568862", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-28", "total_gene_count": "2354", "protein_coding_gene_count": "2005", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-17", "dateModified": "2014-10-17", "datePublished": "2014-10-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium auriscanis" ], "sample_taxid": [ "99807" ], "sample_host_organism": [ "dog" ], "sample_host_organism_id": [], "sample_host_disease": [ "ear infection (otitis)" ], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.733 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.16, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2568862", "Number of Sequences": "33", "Longest Sequences (bp)": "467311", "N50 (bp)": "241167", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "2558", "Average Protein Length": "287.2", "Coding Ratio (%)": "85.8", "Number of rRNAs": "4", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium auriscanis", "strain": "strain=CIP 106629", "accession": "GCA_000767255.1", "taxid": 99807, "species_taxid": 99807, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 837, "total_fragments": 840, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium resistens", "strain": "strain=DSM 45100", "accession": "GCA_000177535.2", "taxid": 258224, "species_taxid": 258224, "relation_to_type": "type", "validated": true, "ani": 80.2481, "matched_fragments": 451, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urogenitale", "strain": "strain=LMM-1652", "accession": "GCA_009026825.1", "taxid": 2487892, "species_taxid": 2487892, "relation_to_type": "type", "validated": true, "ani": 79.228, "matched_fragments": 159, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium dentalis", "strain": "strain=Marseille-P4122", "accession": "GCA_900232865.1", "taxid": 2014528, "species_taxid": 2014528, "relation_to_type": "type", "validated": true, "ani": 78.8764, "matched_fragments": 168, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=ATCC 43734", "accession": "GCA_000163435.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8144, "matched_fragments": 184, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium zhongnanshanii", "strain": "strain=zg-320", "accession": "GCA_014490575.1", "taxid": 2768834, "species_taxid": 2768834, "relation_to_type": "type", "validated": true, "ani": 78.5644, "matched_fragments": 155, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urealyticum", "strain": "strain=NCTC12011", "accession": "GCA_900187235.1", "taxid": 43771, "species_taxid": 43771, "relation_to_type": "type", "validated": true, "ani": 78.4743, "matched_fragments": 139, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium falsenii", "strain": "strain=FDAARGOS_1494", "accession": "GCA_020099275.1", "taxid": 108486, "species_taxid": 108486, "relation_to_type": "type", "validated": true, "ani": 78.4062, "matched_fragments": 209, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urealyticum", "strain": "strain=DSM 7109", "accession": "GCA_000069945.1", "taxid": 43771, "species_taxid": 43771, "relation_to_type": "type", "validated": true, "ani": 78.3266, "matched_fragments": 139, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urealyticum", "strain": "strain=FDAARGOS_994", "accession": "GCA_016127975.1", "taxid": 43771, "species_taxid": 43771, "relation_to_type": "type", "validated": true, "ani": 78.3193, "matched_fragments": 140, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium accolens", "strain": "strain=DSM 44278", "accession": "GCA_023520795.1", "taxid": 38284, "species_taxid": 38284, "relation_to_type": "type", "validated": true, "ani": 77.9805, "matched_fragments": 70, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lactis", "strain": "strain=RW2-5", "accession": "GCA_001274895.1", "taxid": 1231000, "species_taxid": 1231000, "relation_to_type": "type", "validated": true, "ani": 77.9616, "matched_fragments": 79, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium accolens", "strain": "strain=ATCC 49725", "accession": "GCA_000159115.1", "taxid": 38284, "species_taxid": 38284, "relation_to_type": "type", "validated": true, "ani": 77.7629, "matched_fragments": 69, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium terpenotabidum", "strain": "strain=Y-11", "accession": "GCA_000418365.1", "taxid": 89154, "species_taxid": 89154, "relation_to_type": "type", "validated": true, "ani": 77.6876, "matched_fragments": 103, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ciconiae", "strain": "strain=DSM 44920", "accession": "GCA_000372385.1", "taxid": 227319, "species_taxid": 227319, "relation_to_type": "type", "validated": true, "ani": 77.3471, "matched_fragments": 80, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=LMG 29598", "accession": "GCA_007559235.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 77.3449, "matched_fragments": 71, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glyciniphilum", "strain": "strain=AJ 3170", "accession": "GCA_000626675.1", "taxid": 1404244, "species_taxid": 1404244, "relation_to_type": "type", "validated": true, "ani": 77.1717, "matched_fragments": 97, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium hadale", "strain": "strain=NBT06-6", "accession": "GCA_002273005.1", "taxid": 2026255, "species_taxid": 2026255, "relation_to_type": "type", "validated": true, "ani": 77.1498, "matched_fragments": 76, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium atypicum", "strain": "strain=R2070", "accession": "GCA_000732945.1", "taxid": 191610, "species_taxid": 191610, "relation_to_type": "type", "validated": true, "ani": 76.9739, "matched_fragments": 52, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.16, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000767255.1", "gtdb_species": 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78.5644, "matched_fragments": 155, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "97.50", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.97", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000069945.1", "gtdb_species": "s__Corynebacterium urealyticum", "ani": 78.3828, "matched_fragments": 137, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.66", "min_intra_species_ani": "97.50", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_001807485.1", "gtdb_species": "s__Corynebacterium sp001807485", "ani": 78.17, 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69, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_000418365.1", "gtdb_species": "s__Corynebacterium terpenotabidum", "ani": 77.6876, "matched_fragments": 103, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900049755.1", "gtdb_species": "s__Corynebacterium provencense", "ani": 77.4657, "matched_fragments": 76, 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35.173, "optimum_ph": 7.292, "genome_size": 2568862.0, "gc_content": 59.791, "coding_genes": 2390.094, "rRNA16S_genes": 4.282, "tRNA_genes": 52.979, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.75, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.985, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.014, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Corynebacterium", "auriscanis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }