{ "type": "genome", "identifier": "GCF_000768335.1", "organism": "Lysobacter arseniciresistens ZS79", "title": "Lysobacter arseniciresistens ZS79", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000768335.1", "bioproject": "PRJNA224116", "biosample": "SAMN03098276", "wgs_master": "AVPT00000000.1", "refseq_category": "reference genome", "taxid": "913325", "species_taxid": "1385522", "organism_name": "Lysobacter arseniciresistens ZS79", "infraspecific_name": "strain=ZS79", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/24", "asm_name": "ASM76833v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_000768335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/768/335/GCF_000768335.1_ASM76833v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3085112", "genome_size_ungapped": "3085112", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "98", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000768335.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "2931", "protein_coding_gene_count": "2821", "non_coding_gene_count": "52", "pubmed_id": "26516404" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-24", "dateModified": "2014-10-24", "datePublished": "2014-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter arseniciresistens ZS79" ], "sample_taxid": [ "913325" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hubei" ], "sample_host_location_id": [], "data_size": "0.832 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3085112", "Number of Sequences": "98", "Longest Sequences (bp)": "311144", "N50 (bp)": "101761", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.6", "Number of CDSs": "2843", "Average Protein Length": "324.5", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 978, "total_fragments": 982, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 87.8741, "matched_fragments": 764, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 84.1871, "matched_fragments": 667, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": 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982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiicola", "strain": "strain=DSM 21749", "accession": "GCA_900167055.1", "taxid": 435289, "species_taxid": 435289, "relation_to_type": "type", "validated": true, "ani": 83.4431, "matched_fragments": 652, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 83.0515, "matched_fragments": 627, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 82.9186, "matched_fragments": 557, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter enzymogenes", "strain": "strain=ATCC 29487", "accession": "GCA_900106525.1", "taxid": 69, "species_taxid": 69, "relation_to_type": "suspected-type", "validated": true, "ani": 82.7453, "matched_fragments": 668, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter alkalisoli", "strain": "strain=SJ-36", "accession": "GCA_006547045.1", "taxid": 2591633, "species_taxid": 2591633, "relation_to_type": "type", "validated": true, "ani": 82.7409, "matched_fragments": 622, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 82.5713, "matched_fragments": 651, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas arsenica", "strain": "strain=26-35", "accession": "GCA_004352825.1", "taxid": 1586242, "species_taxid": 1586242, "relation_to_type": "type", "validated": true, "ani": 82.4235, "matched_fragments": 572, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter psychrotolerans", "strain": "strain=ZS60", "accession": "GCA_003719825.1", "taxid": 1327343, "species_taxid": 1327343, "relation_to_type": "type", "validated": true, "ani": 82.4211, "matched_fragments": 591, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas marina", "strain": "strain=FR1330", "accession": "GCA_007859325.1", "taxid": 488485, "species_taxid": 488485, "relation_to_type": "type", "validated": true, "ani": 82.4091, "matched_fragments": 613, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiae", "strain": "strain=119BY6-57", "accession": "GCA_014145325.1", "taxid": 2025720, 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