{ "type": "genome", "identifier": "GCF_000768345.1", "organism": "Lysobacter concretionis Ko07 = DSM 16239", "title": "Lysobacter concretionis Ko07 = DSM 16239", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000768345.1", "bioproject": "PRJNA224116", "biosample": "SAMN03098275", "wgs_master": "AVPS00000000.1", "refseq_category": "reference genome", "taxid": "1122185", "species_taxid": "262325", "organism_name": "Lysobacter concretionis Ko07 = DSM 16239", "infraspecific_name": "strain=Ko07", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/24", "asm_name": "ASM76834v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_000768345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/768/345/GCF_000768345.1_ASM76834v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3032117", "genome_size_ungapped": "3032117", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000768345.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "2688", "protein_coding_gene_count": "2597", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-24", "dateModified": "2014-10-24", "datePublished": "2014-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter concretionis Ko07 = DSM 16239" ], "sample_taxid": [ "1122185" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.827 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3032117", "Number of Sequences": "26", "Longest Sequences (bp)": "579565", "N50 (bp)": "386139", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "2647", "Average Protein Length": "337.7", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter concretionis", "strain": "strain=Ko07", "accession": "GCA_000768345.1", "taxid": 262325, "species_taxid": 262325, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 998, "total_fragments": 999, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter ciconiae", "strain": "strain=H21R20", "accession": "GCA_015209725.1", "taxid": 2781022, "species_taxid": 2781022, "relation_to_type": "type", "validated": true, "ani": 84.1011, "matched_fragments": 702, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 84.0983, "matched_fragments": 636, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter avium", "strain": "strain=H23M41", "accession": "GCA_015209745.1", "taxid": 2781023, "species_taxid": 2781023, "relation_to_type": "type", "validated": true, "ani": 83.2411, "matched_fragments": 653, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter antarcticus", "strain": "strain=GW1-59", "accession": "GCA_019802285.1", "taxid": 2862543, "species_taxid": 2862543, "relation_to_type": "type", "validated": true, "ani": 82.8262, "matched_fragments": 624, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 82.8124, "matched_fragments": 631, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 82.3774, "matched_fragments": 608, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiicola", "strain": "strain=DSM 21749", "accession": "GCA_900167055.1", "taxid": 435289, "species_taxid": 435289, "relation_to_type": "type", "validated": true, "ani": 82.0851, "matched_fragments": 596, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 81.6593, "matched_fragments": 610, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter psychrotolerans", "strain": "strain=ZS60", "accession": "GCA_003719825.1", "taxid": 1327343, "species_taxid": 1327343, "relation_to_type": "type", "validated": true, "ani": 81.451, "matched_fragments": 571, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 81.4216, "matched_fragments": 593, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas mephitis", "strain": "strain=DSM 12574", "accession": "GCA_000422305.1", "taxid": 83615, "species_taxid": 83615, "relation_to_type": "type", "validated": true, "ani": 81.2431, "matched_fragments": 601, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter daejeonensis", "strain": "strain=GH1-9", "accession": "GCA_000768355.1", "taxid": 346181, "species_taxid": 346181, "relation_to_type": "type", "validated": true, "ani": 81.2091, "matched_fragments": 547, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 81.1161, "matched_fragments": 610, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter bugurensis", "strain": "strain=KCTC 23077", "accession": "GCA_014652095.1", "taxid": 543356, "species_taxid": 543356, "relation_to_type": "type", "validated": true, "ani": 79.9756, "matched_fragments": 489, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000768345.1", "gtdb_species": "s__Lysobacter concretionis", "ani": 100.0, "matched_fragments": 998, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_015209725.1", "gtdb_species": "s__Lysobacter sp015209725", "ani": 84.1014, "matched_fragments": 702, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000768335.1", "gtdb_species": "s__Lysobacter arseniciresistens", "ani": 84.0925, "matched_fragments": 637, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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