{ "type": "genome", "identifier": "GCF_000768355.1", "organism": "Lysobacter daejeonensis GH1-9", "title": "Lysobacter daejeonensis GH1-9", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000768355.1", "bioproject": "PRJNA224116", "biosample": "SAMN03098277", "wgs_master": "AVPU00000000.1", "refseq_category": "reference genome", "taxid": "1385517", "species_taxid": "346181", "organism_name": "Lysobacter daejeonensis GH1-9", "infraspecific_name": "strain=GH1-9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/24", "asm_name": "ASM76835v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_000768355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/768/355/GCF_000768355.1_ASM76835v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3275062", "genome_size_ungapped": "3275062", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "90", "contig_count": "90", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000768355.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3046", "protein_coding_gene_count": "2943", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-24", "dateModified": "2014-10-24", "datePublished": "2014-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter daejeonensis GH1-9" ], "sample_taxid": [ "1385517" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.899 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3275062", "Number of Sequences": "90", "Longest Sequences (bp)": "258348", "N50 (bp)": "101460", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "2953", "Average Protein Length": "329.0", "Coding Ratio (%)": "89.0", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter daejeonensis", "strain": "strain=GH1-9", "accession": "GCA_000768355.1", "taxid": 346181, "species_taxid": 346181, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1046, "total_fragments": 1052, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter ruishenii", "strain": "strain=CGMCC 1.10136", "accession": "GCA_007830115.1", "taxid": 686800, "species_taxid": 686800, "relation_to_type": "type", "validated": true, "ani": 87.2139, "matched_fragments": 776, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 82.4453, "matched_fragments": 650, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 82.2911, "matched_fragments": 607, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 82.1482, "matched_fragments": 616, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter niastensis", "strain": "strain=DSM 18481", "accession": "GCA_015453285.1", "taxid": 380629, "species_taxid": 380629, "relation_to_type": "type", "validated": true, "ani": 82.067, "matched_fragments": 616, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter prati", "strain": "strain=SYSU H10001", "accession": "GCA_009765215.1", "taxid": 2596704, "species_taxid": 2596704, "relation_to_type": "type", "validated": true, "ani": 81.8604, "matched_fragments": 607, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter enzymogenes", "strain": "strain=ATCC 29487", "accession": "GCA_900106525.1", "taxid": 69, "species_taxid": 69, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8414, "matched_fragments": 647, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter psychrotolerans", "strain": "strain=ZS60", "accession": "GCA_003719825.1", "taxid": 1327343, "species_taxid": 1327343, "relation_to_type": "type", "validated": true, "ani": 81.7939, "matched_fragments": 601, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 81.5446, "matched_fragments": 597, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 81.4275, "matched_fragments": 551, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 81.1993, "matched_fragments": 594, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter antibioticus", "strain": "strain=ATCC 29479", "accession": "GCA_001442535.1", "taxid": 84531, "species_taxid": 84531, "relation_to_type": "type", "validated": true, "ani": 81.197, "matched_fragments": 611, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas indica", "strain": "strain=PPL560", "accession": "GCA_022669045.1", "taxid": 2912242, "species_taxid": 2912242, "relation_to_type": "type", "validated": true, "ani": 80.8548, "matched_fragments": 546, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter avium", "strain": "strain=H23M41", "accession": "GCA_015209745.1", "taxid": 2781023, "species_taxid": 2781023, "relation_to_type": "type", "validated": true, "ani": 80.3087, "matched_fragments": 471, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 80.2515, "matched_fragments": 541, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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