{ "type": "genome", "identifier": "GCF_000768555.3", "organism": "Roseovarius mucosus DSM 17069", "title": "Roseovarius mucosus DSM 17069", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Roseobacter SFB", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000768555.3", "bioproject": "PRJNA224116", "biosample": "SAMN02708827", "wgs_master": "AONH00000000.1", "refseq_category": "reference genome", "taxid": "1288298", "species_taxid": "215743", "organism_name": "Roseovarius mucosus DSM 17069", "infraspecific_name": "strain=DSM 17069", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/24", "asm_name": "Rosmuc_1.1", "asm_submitter": "Roseobacter SFB", "gbrs_paired_asm": "GCA_000768555.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/768/555/GCF_000768555.3_Rosmuc_1.1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4241818", "genome_size_ungapped": "4240467", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000768555.3-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4219", "protein_coding_gene_count": "4054", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-24", "dateModified": "2014-10-24", "datePublished": "2014-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius mucosus DSM 17069" ], "sample_taxid": [ "1288298" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "North Sea: Germany" ], "sample_host_location_id": [], "data_size": "1.184 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4241818", "Number of Sequences": "17", "Longest Sequences (bp)": "789343", "N50 (bp)": "412452", "Gap Ratio (%)": "0.031850", "GCcontent (%)": "61.9", "Number of CDSs": "4187", "Average Protein Length": "306.9", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius mucosus", "strain": "strain=DSM 17069", "accession": "GCA_000768555.3", "taxid": 215743, "species_taxid": 215743, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1405, "total_fragments": 1406, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseovarius azorensis", "strain": "strain=DSM 100674", "accession": "GCA_900109455.1", "taxid": 1287727, "species_taxid": 1287727, "relation_to_type": "type", "validated": true, "ani": 81.7476, "matched_fragments": 787, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius tolerans", "strain": "strain=DSM 11457", "accession": "GCA_900109855.1", "taxid": 74031, "species_taxid": 74031, "relation_to_type": "type", "validated": true, "ani": 81.1142, "matched_fragments": 784, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius lutimaris", "strain": "strain=DSM 28463", "accession": "GCA_900115165.1", "taxid": 1005928, "species_taxid": 1005928, "relation_to_type": "type", "validated": true, "ani": 79.9079, "matched_fragments": 696, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { 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2576383, "species_taxid": 2576383, "relation_to_type": "type", "validated": true, "ani": 78.5273, "matched_fragments": 469, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 78.4061, "matched_fragments": 441, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 78.3953, "matched_fragments": 397, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": 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