{
    "type": "genome",
    "identifier": "GCF_000769825.1",
    "organism": "Flavobacterium rivuli WB 3.3-2 = DSM 21788",
    "title": "Flavobacterium rivuli WB 3.3-2 = DSM 21788",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "hzau",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000769825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03078691",
        "wgs_master": "JRLX00000000.1",
        "refseq_category": "na",
        "taxid": "1121895",
        "species_taxid": "498301",
        "organism_name": "Flavobacterium rivuli WB 3.3-2 = DSM 21788",
        "infraspecific_name": "strain=WB 3.3-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/10/28",
        "asm_name": "ASM76982v1",
        "asm_submitter": "hzau",
        "gbrs_paired_asm": "GCA_000769825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/769/825/GCF_000769825.1_ASM76982v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4479972",
        "genome_size_ungapped": "4479972",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "63",
        "contig_count": "63",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000769825.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3998",
        "protein_coding_gene_count": "3922",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-10-28",
    "dateModified": "2014-10-28",
    "datePublished": "2014-10-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Flavobacterium rivuli WB 3.3-2 = DSM 21788"
        ],
        "sample_taxid": [
            "1121895"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.267 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.62,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4479972",
        "Number of Sequences": "63",
        "Longest Sequences (bp)": "473964",
        "N50 (bp)": "158280",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.6",
        "Number of CDSs": "3930",
        "Average Protein Length": "328.8",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Flavobacterium rivuli",
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                "species_taxid": 498301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Flavobacterium rivuli",
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                "species_taxid": 498301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9982,
                "matched_fragments": 1464,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Flavobacterium subsaxonicum",
                "strain": "strain=DSM 21790",
                "accession": "GCA_000422725.1",
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                "species_taxid": 426226,
                "relation_to_type": "type",
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                "ani": 80.1734,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium subsaxonicum",
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                "accession": "GCA_000769935.1",
                "taxid": 426226,
                "species_taxid": 426226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1501,
                "matched_fragments": 724,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium zepuense",
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                "accession": "GCA_007097145.1",
                "taxid": 2593302,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6383,
                "matched_fragments": 671,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium akiainvivens",
                "strain": "strain=IK-1",
                "accession": "GCA_001278115.1",
                "taxid": 1202724,
                "species_taxid": 1202724,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium akiainvivens",
                "strain": "strain=DSM 25510",
                "accession": "GCA_900115875.1",
                "taxid": 1202724,
                "species_taxid": 1202724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0819,
                "matched_fragments": 454,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium alkalisoli",
                "strain": "strain=XS-5",
                "accession": "GCA_008000935.1",
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                "species_taxid": 2602769,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8089,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium salilacus subsp. salilacus",
                "strain": "strain=SaA2.12",
                "accession": "GCA_004634195.1",
                "taxid": 2545633,
                "species_taxid": 2898423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7071,
                "matched_fragments": 285,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium litorale",
                "strain": "strain=WSW3-B6",
                "accession": "GCA_019613795.1",
                "taxid": 2856519,
                "species_taxid": 2856519,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.48,
                "matched_fragments": 215,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.62,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_000378485.1",
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                "matched_fragments": 1464,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000422725.1",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_007097145.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_009826935.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003403075.1",
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            },
            {
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            },
            {
                "accession": "GCF_003096035.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_004634195.1",
                "gtdb_species": "s__Flavobacterium sp004634195",
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.347,
        "cell_length": 0.243,
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        "growth_tmp": 23.0,
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        "gc_content": 39.6,
        "coding_genes": 3154.048,
        "rRNA16S_genes": 5.145,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Flavobacterium",
        "rivuli",
        "WB",
        "3.3-2",
        "=",
        "DSM",
        "21788"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}