{ "type": "genome", "identifier": "GCF_000769915.1", "organism": "Flavobacterium beibuense F44-8", "title": "Flavobacterium beibuense F44-8", "description": "na", "data type": "Genome sequencing and assembly", "organization": "hzau", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000769915.1", "bioproject": "PRJNA224116", "biosample": "SAMN03078689", "wgs_master": "JRLV00000000.1", "refseq_category": "reference genome", "taxid": "1406840", "species_taxid": "657326", "organism_name": "Flavobacterium beibuense F44-8", "infraspecific_name": "strain=F44-8", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/28", "asm_name": "ASM76991v1", "asm_submitter": "hzau", "gbrs_paired_asm": "GCA_000769915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/769/915/GCF_000769915.1_ASM76991v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3800758", "genome_size_ungapped": "3800758", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "61", "contig_count": "61", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000769915.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3477", "protein_coding_gene_count": "3417", "non_coding_gene_count": "41", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-28", "dateModified": "2014-10-28", "datePublished": "2014-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium beibuense F44-8" ], "sample_taxid": [ "1406840" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beibu Gulf" ], "sample_host_location_id": [], "data_size": "1.072 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3800758", "Number of Sequences": "61", "Longest Sequences (bp)": "419796", "N50 (bp)": "209944", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.7", "Number of CDSs": "3372", "Average Protein Length": "328.6", "Coding Ratio (%)": "87.4", "Number of rRNAs": "1", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium beibuense", "strain": "strain=F44-8", "accession": "GCA_000769915.1", "taxid": 657326, "species_taxid": 657326, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1240, "total_fragments": 1240, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium rakeshii", "strain": "strain=JCM 17928", "accession": "GCA_009741375.1", "taxid": 1038845, "species_taxid": 1038845, "relation_to_type": "type", "validated": true, "ani": 93.9352, "matched_fragments": 1061, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alkalisoli", "strain": "strain=XS-5", "accession": "GCA_008000935.1", "taxid": 2602769, "species_taxid": 2602769, "relation_to_type": "type", "validated": true, "ani": 82.3414, "matched_fragments": 868, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cerinum", "strain": "strain=1E403", "accession": "GCA_004028155.1", "taxid": 2502784, "species_taxid": 2502784, "relation_to_type": "type", "validated": true, "ani": 78.3233, "matched_fragments": 354, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salilacus subsp. altitudinum", "strain": "strain=LaA7.5", "accession": "GCA_010078225.1", "taxid": 2691899, "species_taxid": 2898423, "relation_to_type": "type", "validated": true, "ani": 77.9681, "matched_fragments": 331, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium subsaxonicum", "strain": "strain=WB 4.1-42", "accession": "GCA_000769935.1", "taxid": 426226, "species_taxid": 426226, "relation_to_type": "type", "validated": true, "ani": 77.7615, "matched_fragments": 305, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium zepuense", "strain": "strain=ZT4R6", "accession": "GCA_007097145.1", "taxid": 2593302, "species_taxid": 2593302, "relation_to_type": "type", "validated": true, "ani": 77.6374, "matched_fragments": 318, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium subsaxonicum", "strain": "strain=DSM 21790", "accession": "GCA_000422725.1", "taxid": 426226, "species_taxid": 426226, "relation_to_type": "type", "validated": true, "ani": 77.6065, "matched_fragments": 314, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium coralii", "strain": "strain=D11R37", "accession": "GCA_019891545.1", "taxid": 2838017, "species_taxid": 2838017, "relation_to_type": "type", "validated": true, "ani": 77.4804, "matched_fragments": 271, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium litorale", "strain": "strain=WSW3-B6", "accession": "GCA_019613795.1", "taxid": 2856519, "species_taxid": 2856519, "relation_to_type": "type", "validated": true, "ani": 77.468, "matched_fragments": 248, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium microcysteis", "strain": "strain=MaA-Y11", "accession": "GCA_006385255.1", "taxid": 2596891, "species_taxid": 2596891, "relation_to_type": "type", "validated": true, "ani": 77.388, "matched_fragments": 135, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium akiainvivens", "strain": "strain=IK-1", "accession": "GCA_001278115.1", "taxid": 1202724, "species_taxid": 1202724, "relation_to_type": "type", "validated": true, "ani": 77.2304, "matched_fragments": 248, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium akiainvivens", "strain": "strain=DSM 25510", "accession": "GCA_900115875.1", "taxid": 1202724, "species_taxid": 1202724, "relation_to_type": "type", "validated": true, "ani": 77.1579, "matched_fragments": 244, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lacus", "strain": "strain=CGMCC 1.12504", "accession": "GCA_003268815.1", "taxid": 1353778, "species_taxid": 1353778, "relation_to_type": "type", "validated": true, "ani": 77.1465, "matched_fragments": 86, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.0761, "matched_fragments": 128, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Abyssalbus ytuae", "strain": "strain=MT3330", "accession": "GCA_022807975.1", "taxid": 2926907, "species_taxid": 2926907, "relation_to_type": "type", "validated": true, "ani": 76.2039, "matched_fragments": 68, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000769915.1", "gtdb_species": "s__Flavobacterium beibuense", "ani": 100.0, "matched_fragments": 1240, "total_fragments": 1240, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009741375.1", "gtdb_species": "s__Flavobacterium rakeshii", "ani": 93.9352, "matched_fragments": 1061, "total_fragments": 1240, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004151245.1", "gtdb_species": "s__Flavobacterium beibuense_A", "ani": 82.5396, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "beibuense", "F44-8" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }