{ "type": "genome", "identifier": "GCF_000770585.1", "organism": "Legionella norrlandica", "title": "Legionella norrlandica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "public health agency of sweden", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000770585.1", "bioproject": "PRJNA224116", "biosample": "SAMN02746164", "wgs_master": "JNCF00000000.1", "refseq_category": "reference genome", "taxid": "1498499", "species_taxid": "1498499", "organism_name": "Legionella norrlandica", "infraspecific_name": "strain=LEGN", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/10/31", "asm_name": "ASM77058v1", "asm_submitter": "public health agency of sweden", "gbrs_paired_asm": "GCA_000770585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/770/585/GCF_000770585.1_ASM77058v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3070855", "genome_size_ungapped": "3070855", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "157", "contig_count": "157", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000770585.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "2864", "protein_coding_gene_count": "2511", "non_coding_gene_count": "45", "pubmed_id": "25406235" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-10-31", "dateModified": "2014-10-31", "datePublished": "2014-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella norrlandica" ], "sample_taxid": [ "1498499" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Pitea" ], "sample_host_location_id": [], "data_size": "0.876 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3070855", "Number of Sequences": "157", "Longest Sequences (bp)": "141408", "N50 (bp)": "52410", "Gap Ratio (%)": "0.000261", "GCcontent (%)": "37.5", "Number of CDSs": "2830", "Average Protein Length": "302.7", "Coding Ratio (%)": "83.7", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella norrlandica", "strain": "strain=LEGN", "accession": "GCA_000770585.1", "taxid": 1498499, "species_taxid": 1498499, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 945, "total_fragments": 953, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella pneumophila subsp. pascullei", "strain": "strain=NCTC12273", "accession": "GCA_900637585.1", "taxid": 91890, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 80.2958, "matched_fragments": 551, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila subsp. pascullei", "strain": "strain=ATCC 33737", "accession": "GCA_000586255.1", "taxid": 91890, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 80.2597, "matched_fragments": 544, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila subsp. pneumophila", "strain": "strain=PartS-Lpneumophila-RM8376", "accession": "GCA_022870105.1", "taxid": 91891, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 80.2284, "matched_fragments": 511, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila", "strain": "strain=NCTC11192", "accession": "GCA_900452735.1", "taxid": 446, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 80.1767, "matched_fragments": 513, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila", "strain": "strain=FDAARGOS_779", "accession": "GCA_006364635.1", "taxid": 446, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 80.1545, "matched_fragments": 525, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila", "strain": "strain=ATCC 33152", "accession": "GCA_001582475.1", "taxid": 446, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 80.1511, "matched_fragments": 521, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila subsp. pneumophila", "strain": "strain=ATCC 33152", "accession": "GCA_000586375.1", "taxid": 91891, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 80.1462, "matched_fragments": 525, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila subsp. fraseri", "strain": "strain=ATCC 33156", "accession": "GCA_000586315.1", "taxid": 91892, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 79.8566, "matched_fragments": 535, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila subsp. fraseri", "strain": "strain=Los Angeles 1", "accession": "GCA_900639965.1", "taxid": 91892, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 79.8226, "matched_fragments": 543, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=FDAARGOS_1480", "accession": "GCA_019930885.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 77.7577, "matched_fragments": 165, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=WA-316-C3", "accession": "GCA_001467525.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 77.7505, "matched_fragments": 166, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=FDAARGOS_200", "accession": "GCA_002082905.2", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 77.7276, "matched_fragments": 172, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella anisa", "strain": "strain=WA-316-C3", "accession": "GCA_900639785.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 77.6483, "matched_fragments": 167, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella rowbothamii", "strain": "strain=LLAP6", "accession": "GCA_900639985.1", "taxid": 96229, "species_taxid": 96229, "relation_to_type": "type", "validated": true, "ani": 77.3159, "matched_fragments": 116, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000770585.1", "gtdb_species": "s__Legionella norrlandica", "ani": 100.0, "matched_fragments": 945, "total_fragments": 953, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900637585.1", "gtdb_species": "s__Legionella pascullei", "ani": 80.2916, "matched_fragments": 551, "total_fragments": 953, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.72", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000008485.1", "gtdb_species": "s__Legionella pneumophila", "ani": 80.1648, "matched_fragments": 528, "total_fragments": 953, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.85", "min_intra_species_ani": "95.56", "mean_intra_species_af": 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77.5574, "matched_fragments": 148, "total_fragments": 953, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "97.91", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003989735.1", "gtdb_species": "s__Legionella sp003989735", "ani": 77.4062, "matched_fragments": 121, "total_fragments": 953, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001468005.1", "gtdb_species": "s__Legionella steelei", "ani": 77.3849, "matched_fragments": 151, 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