{ "type": "genome", "identifier": "GCF_000770795.1", "organism": "Lysobacter dokdonensis DS-58", "title": "Lysobacter dokdonensis DS-58", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yonsei University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000770795.1", "bioproject": "PRJNA224116", "biosample": "SAMN03024168", "wgs_master": "JRKJ00000000.1", "refseq_category": "reference genome", "taxid": "1300345", "species_taxid": "414050", "organism_name": "Lysobacter dokdonensis DS-58", "infraspecific_name": "strain=DS-58", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/11/04", "asm_name": "ASM77079v1", "asm_submitter": "Yonsei University", "gbrs_paired_asm": "GCA_000770795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/770/795/GCF_000770795.1_ASM77079v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3274406", "genome_size_ungapped": "3274406", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000770795.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "3219", "protein_coding_gene_count": "3117", "non_coding_gene_count": "57", "pubmed_id": "26664701" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-11-04", "dateModified": "2014-11-04", "datePublished": "2014-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter dokdonensis DS-58" ], "sample_taxid": [ "1300345" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Dokdo Island, East Sea (Sea of Japan)" ], "sample_host_location_id": [], "data_size": "0.887 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3274406", "Number of Sequences": "25", "Longest Sequences (bp)": "631476", "N50 (bp)": "207796", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "3138", "Average Protein Length": "322.4", "Coding Ratio (%)": "92.7", "Number of rRNAs": "6", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter dokdonensis", "strain": "strain=DS-58", "accession": "GCA_000770795.1", "taxid": 414050, "species_taxid": 414050, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1075, 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"below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 80.9005, "matched_fragments": 520, "total_fragments": 1077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas marina", "strain": "strain=FR1330", "accession": "GCA_007859325.1", "taxid": 488485, "species_taxid": 488485, "relation_to_type": "type", "validated": true, "ani": 80.5997, "matched_fragments": 532, "total_fragments": 1077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 80.5892, "matched_fragments": 470, "total_fragments": 1077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysobacter", "dokdonensis", "DS-58" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }