{ "type": "genome", "identifier": "GCF_000771245.1", "organism": "Bifidobacterium minimum DSM 20102", "title": "Bifidobacterium minimum DSM 20102", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000771245.1", "bioproject": "PRJNA224116", "biosample": "SAMN02442018", "wgs_master": "JDUA00000000.1", "refseq_category": "na", "taxid": "1121109", "species_taxid": "1693", "organism_name": "Bifidobacterium minimum DSM 20102", "infraspecific_name": "strain=DSM 20102", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/11/04", "asm_name": "DSM-20102", "asm_submitter": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University", "gbrs_paired_asm": "GCA_000771245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/771/245/GCF_000771245.1_DSM-20102", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1863807", "genome_size_ungapped": "1863807", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000771245.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "1575", "protein_coding_gene_count": "1469", "non_coding_gene_count": "51", "pubmed_id": "25658111" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-11-04", "dateModified": "2014-11-04", "datePublished": "2014-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium minimum DSM 20102" ], "sample_taxid": [ "1121109" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.521 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1863807", "Number of Sequences": "76", "Longest Sequences (bp)": "252931", "N50 (bp)": "137121", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "1496", "Average Protein Length": "353.4", "Coding Ratio (%)": "85.1", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium minimum", "strain": "strain=DSM 20102", "accession": "GCA_000771245.1", "taxid": 1693, "species_taxid": 1693, "relation_to_type": 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"below_threshold" }, { "organism_name": "Bifidobacterium vespertilionis", "strain": "strain=RST16", "accession": "GCA_008698145.1", "taxid": 2562524, "species_taxid": 2562524, "relation_to_type": "type", "validated": true, "ani": 78.4685, "matched_fragments": 185, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium stellenboschense", "strain": "strain=DSM 23968", "accession": "GCA_000741785.1", "taxid": 762211, "species_taxid": 762211, "relation_to_type": "type", "validated": true, "ani": 78.4528, "matched_fragments": 194, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium lemurum", "strain": "strain=DSM 28807", "accession": "GCA_001895165.1", "taxid": 1603886, "species_taxid": 1603886, "relation_to_type": "type", "validated": true, "ani": 78.3873, "matched_fragments": 186, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium avesanii", "strain": "strain=DSM 100685", "accession": "GCA_009299475.1", "taxid": 1798157, "species_taxid": 1798157, "relation_to_type": "type", "validated": true, "ani": 78.3849, "matched_fragments": 191, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium lemurum", "strain": "strain=DSM 28807", "accession": "GCA_002259665.1", "taxid": 1603886, "species_taxid": 1603886, "relation_to_type": "type", "validated": true, "ani": 78.3505, "matched_fragments": 188, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium leontopitheci", "strain": "strain=LMG 31471", "accession": "GCA_009193355.1", "taxid": 2650774, "species_taxid": 2650774, "relation_to_type": "type", "validated": true, "ani": 78.1328, "matched_fragments": 204, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 78.1132, "matched_fragments": 200, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium simiarum", "strain": "strain=TRI 7", "accession": "GCA_002802905.1", "taxid": 2045441, "species_taxid": 2045441, "relation_to_type": "type", "validated": true, "ani": 78.0642, "matched_fragments": 183, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium commune", "strain": "strain=DSM 28792", "accession": "GCA_014191315.1", "taxid": 1505727, "species_taxid": 1505727, "relation_to_type": "type", "validated": true, "ani": 77.9351, "matched_fragments": 58, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 75.7433, "matched_fragments": 57, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium siamense", "strain": "strain=NBRC 106093", "accession": "GCA_016862795.1", "taxid": 685454, "species_taxid": 685454, "relation_to_type": "type", "validated": true, "ani": 75.0294, "matched_fragments": 56, "total_fragments": 591, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000741645.1", "gtdb_species": "s__Bifidobacterium minimum", "ani": 99.9907, "matched_fragments": 590, "total_fragments": 591, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"min_intra_species_ani": "98.27", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 128, "status": "-" }, { "accession": "GCF_000741215.1", "gtdb_species": "s__Bifidobacterium pullorum_B", "ani": 78.5214, "matched_fragments": 196, "total_fragments": 591, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.16", "min_intra_species_ani": "95.67", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_008698145.1", "gtdb_species": "s__Bifidobacterium vespertilionis", "ani": 78.4685, "matched_fragments": 185, "total_fragments": 591, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", 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