{ "type": "genome", "identifier": "GCF_000771305.1", "organism": "Bifidobacterium breve DSM 20213 = JCM 1192", "title": "Bifidobacterium breve DSM 20213 = JCM 1192", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000771305.1", "bioproject": "PRJNA224116", "biosample": "SAMN02442021", "wgs_master": "JDUD00000000.1", "refseq_category": "na", "taxid": "518634", "species_taxid": "1685", "organism_name": "Bifidobacterium breve DSM 20213 = JCM 1192", "infraspecific_name": "strain=DSM 20213", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/11/04", "asm_name": "DSM-20213", "asm_submitter": "Key Laboratory of Dairy BiotecInner Mongolia Agricultural University", "gbrs_paired_asm": "GCA_000771305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/771/305/GCF_000771305.1_DSM-20213", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2257131", "genome_size_ungapped": "2257131", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000771305.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "2001", "protein_coding_gene_count": "1871", "non_coding_gene_count": "57", "pubmed_id": "25658111" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-11-04", "dateModified": "2014-11-04", "datePublished": "2014-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium breve DSM 20213 = JCM 1192" ], "sample_taxid": [ "518634" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.640 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2257131", "Number of Sequences": "29", "Longest Sequences (bp)": "401919", "N50 (bp)": "232685", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.9", "Number of CDSs": "1949", "Average Protein Length": "334.2", "Coding Ratio (%)": "86.6", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium breve", "strain": "strain=DSM 20213", "accession": "GCA_000771305.1", "taxid": 1685, "species_taxid": 1685, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 737, "total_fragments": 737, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium breve", "strain": "strain=NCTC11815", "accession": "GCA_900637145.1", "taxid": 1685, "species_taxid": 1685, "relation_to_type": "type", "validated": true, "ani": 99.9983, "matched_fragments": 736, "total_fragments": 737, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium breve", "strain": "strain=JCM 1192", "accession": "GCA_001025175.1", "taxid": 1685, "species_taxid": 1685, "relation_to_type": "type", "validated": true, "ani": 99.9975, "matched_fragments": 736, "total_fragments": 737, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium breve", "strain": "strain=DSM 20213", "accession": "GCA_000158015.1", "taxid": 1685, "species_taxid": 1685, "relation_to_type": "type", "validated": true, "ani": 99.9968, "matched_fragments": 737, "total_fragments": 737, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium longum subsp. suillum", "strain": "strain=SU-851", "accession": "GCA_016882605.1", "taxid": 1931217, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 87.5393, "matched_fragments": 515, "total_fragments": 737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium longum subsp. infantis", "strain": "strain=DSM 20088", "accession": "GCA_000771105.1", "taxid": 1682, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 87.2596, "matched_fragments": 532, "total_fragments": 737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium longum subsp. longum", "strain": "strain=JCM 1217", "accession": "GCA_000196555.1", "taxid": 1679, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 86.8819, "matched_fragments": 516, "total_fragments": 737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 83.1411, "matched_fragments": 478, "total_fragments": 737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium myosotis", "strain": "strain=DSM 100196", "accession": "GCA_002259745.1", "taxid": 1630166, "species_taxid": 1630166, "relation_to_type": "type", "validated": true, "ani": 82.9914, "matched_fragments": 446, "total_fragments": 737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 81.3239, "matched_fragments": 336, "total_fragments": 737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 78.918, "matched_fragments": 203, "total_fragments": 737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium mizhiense", "strain": "strain=S053-2", "accession": "GCA_020884755.1", "taxid": 2879940, "species_taxid": 2879940, "relation_to_type": "type", "validated": true, "ani": 77.7914, "matched_fragments": 127, "total_fragments": 737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia yuyongxinii", "strain": "strain=Z443", "accession": "GCA_006352065.1", "taxid": 2589797, "species_taxid": 2589797, "relation_to_type": "type", "validated": true, "ani": 76.4239, "matched_fragments": 52, "total_fragments": 737, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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"0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 49, "status": "-" }, { "accession": "GCF_000196555.1", "gtdb_species": "s__Bifidobacterium longum", "ani": 86.9015, "matched_fragments": 515, "total_fragments": 737, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.67", "num_clustered_genomes": 481, "status": "-" }, { "accession": "GCF_003129905.1", "gtdb_species": "s__Bifidobacterium callitrichidarum", "ani": 83.2391, "matched_fragments": 458, "total_fragments": 737, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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